PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I03010.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HD-ZIP
Protein Properties Length: 839aa    MW: 91978 Da    PI: 5.9177
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I03010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-182885457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Pahal.I03010.1 28 YVRYTPEQVEALERVYAECPKPSSARRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 85
                    6789***************************************************996 PP
2START153.41.9e-481643712204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++  
  Pahal.I03010.1 164 IAEETLTEFLSKATGTAIDWVQMPGMKPGPDSFGIVTVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGngGTIEIV 257
                     789*******************************************************9999999999.****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                      ++++a+++lvp Rdf+++Ry+ +l++g++v++++S++     ++    +++vRae+lpSg+l++++++g+s v +v+h dl++++++++lr+l+
  Pahal.I03010.1 258 CMQMYAPTTLVPaRDFWTLRYTTTLEDGSLVVCERSLSGSGVGQStatAQQFVRAEMLPSGYLVRQCEGGGSIVRIVDHLDLDAWSVPEVLRPLY 352
                     *************************************9765554445699********************************************* PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+++ ++k+++a+l++ +
  Pahal.I03010.1 353 ESSRVVAQKMTTAALRYIR 371
                     ***************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-19785IPR009057Homeodomain-like
PROSITE profilePS5007115.582286IPR001356Homeobox domain
SMARTSM003898.9E-172490IPR001356Homeobox domain
SuperFamilySSF466891.37E-162788IPR009057Homeodomain-like
CDDcd000863.79E-172787No hitNo description
PfamPF000462.4E-162885IPR001356Homeobox domain
CDDcd146863.76E-679118No hitNo description
PROSITE profilePS5084827.74154382IPR002913START domain
CDDcd088752.42E-71158374No hitNo description
SMARTSM002342.6E-35163373IPR002913START domain
SuperFamilySSF559619.89E-34163375No hitNo description
Gene3DG3DSA:3.30.530.204.5E-20163355IPR023393START-like domain
PfamPF018523.1E-46164371IPR002913START domain
PfamPF086709.1E-49695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MAAAVAMRSG SSDGGGGYDK GGMDTGKYVR YTPEQVEALE RVYAECPKPS SARRQQLLRE  60
CPILSNIEPK QIKVWFQNRR CRDKQRKESS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAYMKQQ LQNPSLANDV SCESNVTTPA NLRDASNPSG LLSIAEETLT EFLSKATGTA  180
IDWVQMPGMK PGPDSFGIVT VSHGCRGVAA RACGLVNLEP TKIVEILKDR PSWFRDCRSL  240
EVFTMLPAGN GGTIEIVCMQ MYAPTTLVPA RDFWTLRYTT TLEDGSLVVC ERSLSGSGVG  300
QSTATAQQFV RAEMLPSGYL VRQCEGGGSI VRIVDHLDLD AWSVPEVLRP LYESSRVVAQ  360
KMTTAALRYI RQIAQETSGE VVYALGRQPA VLRTFSQRLS RGFNDAISGF NDDGWSVMGG  420
DGIEDVIITC NSKKIRNSSN PASAFGAPGG IICAKASMLL QSVPPAVLVR FLREHRSEWA  480
DYNFDAYSAS ALKTSPCSLP GLRPMRFSGS QIIMPLAHTV ENEEILEVVR LEGQALTHDE  540
GVLSRDIHLL QLCTGIDEKS MGSCFQLVFA PIDELFPDDA PLISSGFRVI PLDIKTDGVP  600
SGRTLDLASS LEVGTTAQHA SGDGSQDDCN LRSVLTIAFQ FPYEIHLQDS VAAIARQYVR  660
SIVSAVQRVS MAISPSRSGL STGQKIISGF PEAATLVRWI CQSYQYHLGV DLVSHADEAG  720
ESLLRMFWDH QDAVLCCSFK EKPVFTFGNQ MGIDMLETTL IALQDLTLDK IFDEAGRKAL  780
HVEIPKLMEQ GYAYLPAGVC LSGMGRHVSY EQAVAWKVLG EDSNVHCLAF CFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796396.10.0homeobox-leucine zipper protein HOX9
RefseqXP_025796397.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2S3ILG50.0A0A2S3ILG5_9POAL; Uncharacterized protein
STRINGPavir.Ia01697.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein