PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02686.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 463aa    MW: 49266.7 Da    PI: 5.8475
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02686.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-164390148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTt Ed  lvd v+++G g+W+++ r  g+ R++k+c++rw ++l
   Pahal.I02686.1 43 KGPWTTAEDAMLVDHVRRHGEGNWNAVQRLTGLLRCGKSCRLRWTNHL 90
                     79******************************99***********996 PP
2Myb_DNA-binding50.16.6e-1696139146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+++++E+ l++++++qlG++ W++ a++++ gRt++++k++w++
   Pahal.I02686.1  96 KGSFSPDEEILIAQLHAQLGNK-WARMAAHLP-GRTDNEIKNYWNT 139
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3053890IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-204193IPR009057Homeodomain-like
SMARTSM007172.1E-134292IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-2842137IPR009057Homeodomain-like
PfamPF002495.6E-144390IPR001005SANT/Myb domain
CDDcd001671.25E-104590No hitNo description
PROSITE patternPS0017505867IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129422.51391145IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2494144IPR009057Homeodomain-like
SMARTSM007172.4E-1495143IPR001005SANT/Myb domain
PfamPF002497.4E-1596139IPR001005SANT/Myb domain
CDDcd001671.14E-1098139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MERSPGAALT SSPEEEEEKA ADGHGEEAVE QEDEAAAPVV LKKGPWTTAE DAMLVDHVRR  60
HGEGNWNAVQ RLTGLLRCGK SCRLRWTNHL RPNLKKGSFS PDEEILIAQL HAQLGNKWAR  120
MAAHLPGRTD NEIKNYWNTR TKRRQRAGLP VYPPEVQLQL ALSKRCRYDD FSPLASPQLP  180
GAVNVQALDA TSAGYTSSRP APLDLARQLA ATSQTVQFLS PQPFSAPSSP WAKPFARNAQ  240
YFQFAHSSPV SPSTPTGPLH PVTPDLSLGY GVRSTDQSRL APLSPSPVPR VELPSNQFGQ  300
AMPPTSAAAA GLGGAALSDH QHQNAASLEK MLQELHDAIK VDPSALAPAN GDAARPGGGG  360
GAVLERHGGR ENQLDGQHRD DDMGTLFDMM IPTLDAPETV PLPPAAAAPN HSGSTSQHSS  420
DDQDPSTADL GVDLPAAGGA SPSDQDWGLD GVCQWSSMSR IC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-294114425127MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425370.0BT042537.1 Zea mays full-length cDNA clone ZM_BFb0325G13 mRNA, complete cds.
GenBankKJ7275320.0KJ727532.1 Zea mays clone pUT5392 MYB transcription factor (MYB129) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791606.10.0transcription factor MYB101-like
TrEMBLA0A2S3IL200.0A0A2S3IL20_9POAL; Uncharacterized protein
STRINGPavir.Ib03827.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.22e-67myb domain protein 101