PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02549.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 316aa    MW: 34391.3 Da    PI: 4.925
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02549.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.4e-102422821055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pahal.I02549.1 242 KKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 282
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-14230298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.92E-12230286No hitNo description
PROSITE profilePS5088815.205232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-13232295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10238287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7242282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MESGGVIAEA GWSMVGMPSQ AEESEIMEQL LGTFPSNCEQ GDQELPWPIQ ASNAFYSHCH  60
ASSSTYSSTN SNSSGSPTFV VPSEYGGYYL SNSNEALDLN FCTAPMHLHM VQEQGAAQFM  120
DTILNPPYGS SDSSCEDLGD SGMNLLDSIG ASVKRKHLEQ GKLDGPTRSR KCARKSDSKR  180
AKKTMQLEDQ DGGVAANGQS SSGCTFENDS SAFRGPPVVA NLNAKAQADR RSATESQSLY  240
AKKRRERINE RLRILQNLVP NGTKVDISTM LEEAVQYVKF LQLQIKLLSS DEMWMYAPIA  300
YNGMNIGIDL NLSQH*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797849.10.0transcription factor bHLH139-like
TrEMBLA0A2S3IKN80.0A0A2S3IKN8_9POAL; Uncharacterized protein
STRINGPavir.Ib03951.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-37bHLH family protein