PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02538.5
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 284aa    MW: 32067 Da    PI: 10.0713
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02538.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.23.8e-1025793083
                    ..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3 30 keesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                    +++s+ +tl++ +++++W  k+  r+ s++ +l + W +Fv++n+++egD++++ 
  Pahal.I02538.5 25 PHRSTNVTLQTaSKSNKWHPKFYKRNASRKNMLMGQWLDFVRDNHVQEGDICLLF 79
                    4578899**996777*******77999999**********************875 PP
2B3491.1e-152112773299
                     --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
              B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                     +++t+ le   g++W+ ++ + +++++ +l +GW +F+++ngL++gD+++F l+++ ++ +++v+++++
  Pahal.I02538.5 211 SGQTVALEC-MGKTWKTQMVIHNGRRW-FLNGGWAKFARDNGLRVGDICLFDLKKNaRKLTMKVHIISR 277
                     455666555.89*******77777766.6999**********************999********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.56197IPR003340B3 DNA binding domain
SMARTSM010190.1297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-12296IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-121196IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-121292No hitNo description
PfamPF023622.8E-82580IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21172277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-18173276IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-17178276No hitNo description
SMARTSM010196.6E-5180278IPR003340B3 DNA binding domain
PfamPF023628.8E-14201277IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012221278IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQKRNVQPPG PFLGISKEYS FPHFPHRSTN VTLQTASKSN KWHPKFYKRN ASRKNMLMGQ  60
WLDFVRDNHV QEGDICLLFP AEGGRRYTYT VYLLCASATH SIGRAGFQIV CPCPSRSSAK  120
MASEVHIMEE TTNDESLDSE DSGGSSPPLY IVPCRNYLSK SQKKIVEERV RAIQSEVPIC  180
VAVMKNNNVG DAQKWMLELG VRYAAVHLPA SGQTVALECM GKTWKTQMVI HNGRRWFLNG  240
GWAKFARDNG LRVGDICLFD LKKNARKLTM KVHIISREQF SLK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797620.10.0B3 domain-containing protein Os03g0619800-like isoform X3
SwissprotQ6AV221e-83Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A2S3IK440.0A0A2S3IK44_9POAL; Uncharacterized protein
STRINGPavir.Ia01277.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.19e-06B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]