PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I02138.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 750aa    MW: 79798.6 Da    PI: 6.8835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I02138.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07309329526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  Pahal.I02138.1 309 PCPDFRK-GVCRRGDMCEYAHG 329
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.43E-853169No hitNo description
PfamPF127965.6E-1091160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2491121IPR002110Ankyrin repeat
SuperFamilySSF484031.76E-1491169IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.54791166IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1692170IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.85126161IPR002110Ankyrin repeat
SMARTSM002480.026126158IPR002110Ankyrin repeat
SMARTSM003561.1E-5304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4308331IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4309329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375309331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4337367IPR000571Zinc finger, CCCH-type
SMARTSM0035637339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MMNSMPISAS PAAGVDGGAV AAGTPRKNAT AAAAVAEMAR HLTVDTDDAF AGLLELAADD  60
DAEGLRRALE HAPPAAADEA GLWYGRRKVL EHRTPLMVAA TYGSLAALRL LVSLPSVDVN  120
RRSGTDGTTA LHCAASGGSR TAVEAVKLLL GAGADADATD DSGRRPADVI SVPPKMFDAK  180
FALQDLLGCP KAEHGMLRVV TRSTNSISSP VSSPTAEDAR SPSAAVMMTT KFADLPRVAT  240
SEKKEYPVDP SLPDIKNSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGVCRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTS CNRRVCFFAH  360
TTDELRPLYV STGSAVPSPR ASATAAMEMA AAMGLMPGSP SSVSAVMTPF TPPMSPSGNG  420
MPPSLGWQQP NVPTLHLPGS SLQSSRLRTS LSARDMPADD YSLMQDLDSQ LMNDLCYSRL  480
SSSTGNHSAR TKSLNPSNLD DLFSAEMVSS PRYSNADQGA LFSPSHKAAI LNQFQQQQQA  540
LLSPINTGVY SPKAVDNQQL PSHSSLLQAS LGISSPGRMS PRCVESGSPM NSHLAAALVQ  600
REKQQQQTMR SLSSRDLGPS AARASALVGS PLSSSWSKWG SPSGTPDWGV NGEELGKLRR  660
SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTTAESINSV GPSPLMPPGM NNGESSGLNT  720
QLDGHDQAAA IGALLEQIQL DQQVGSLAT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794600.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2S3IJ350.0A0A2S3IJ35_9POAL; Uncharacterized protein
STRINGSb01g011150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]