PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02060.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 322aa MW: 34328.3 Da PI: 9.2543

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	84.3	1.7e-26	80	174	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++ ql+eK+rrLK+K++ +++++ g +p+ ++hd+++++l++++W Pahal.I02060.1 80 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRAQLSEKLRRLKNKYRSVSARVAGGLDPARLAPHDRDVLHLCSRLW 173 79*****************.556878888************************************************************** PP DUF573 97 g 97 + Pahal.I02060.1 174 D 174 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.6E-24	81	174	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MASGQQALPV PAPVPPNPNP TAPADPTPPA GARKLPIKRR SPRPSSSPPS SSSPASSDPL 60 RAPAAGGGGA GSDQQQPPFK FQRIWSESDE LRFLQGLLGC GAQGLVFPRD LNVFYDRFSE 120 SMPQPYTRAQ LSEKLRRLKN KYRSVSARVA GGLDPARLAP HDRDVLHLCS RLWDPANAAT 180 SPFTSGGGAS GNKRRRANPR GTQLLAPDAS GDSNSHDYNG EQPEDVVALP NGNNGIGNEI 240 GDHKVVVPCS NEHRMANAVL DVFEECLREA KASGIINNGN VGGSAEESEL AKRWRVQRMD 300 ELHVLSRRLR LLVEDAAAAG H*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU967779	0.0	EU967779.1 Zea mays clone 306034 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025791535.1	0.0	probable transcription factor At4g00390
TrEMBL	A0A2S3IIY7	0.0	A0A2S3IIY7_9POAL; Uncharacterized protein
STRING	Pavir.Ib04304.1.p	1e-160	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8695	32	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	3e-12	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pahal.I02060.1