PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I02019.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 281aa MW: 29721.4 Da PI: 8.3601

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I02019.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	72.4	5.7e-23	18	64	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 ++s e++sk Fslpi++AA+ Lgvc++vLKriCR +GI RWP+Rk+ Pahal.I02019.1 18 SLSYEEISKLFSLPIAEAASILGVCTSVLKRICRSHGIVRWPYRKLV 64 6899*****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.745	2	86	IPR003035	RWP-RK domain
Pfam	PF02042	4.3E-21	19	64	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MASNAPAPQP QPKPTRVSLS YEEISKLFSL PIAEAASILG VCTSVLKRIC RSHGIVRWPY 60 RKLVSGKAGD DTKGPEREKA KELLELSKIA KQKAFSPPGS SIVSTRISQG AAKSQQGSSK 120 AGQVSVSPPA VKQNASASLA HGSQAKAIPS YMDDFKYGFP SSGLSCETMK WWGGSSDSDC 180 APTKDGSCEA HGEASKSMTD DDELDWGADE AEAEADGAVT AEASAQLCSL RRKAVDDGRK 240 LLNGDTRRGQ DFSRLNKRQK LALAQVFGAS LPDVVLVFSE *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793833.1	0.0	protein NLP7-like
TrEMBL	A0A2T8I122	0.0	A0A2T8I122_9POAL; Uncharacterized protein
STRING	Pavir.J04809.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6705	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	2e-10	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Pahal.I02019.1