PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01943.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 570aa    MW: 61622.9 Da    PI: 5.7021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01943.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3503.7e-1071925613374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     + Ll+c +  +  d +la   L +++  as dgdp +R+a+yf+ ALa+rla    +  ++ ++s++++  s+e +  +k++++++P+ kf+hlt
  Pahal.I01943.1 192 QSLLACSRTAA-ADPALAAVELVKVRAAASDDGDPAERVAFYFADALARRLAC---GGGAQTSTSSDDRFASDELTLCYKTLNDACPYSKFAHLT 282
                     67999999655.588999999999****************************8...22222333444444599999******************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aNqaIlea+ +++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp  g   + +l +t  rL++fA+ lgv+fef + + +++++l
  Pahal.I01943.1 283 ANQAILEATGTATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRVRISGVPSPYLGqkPAASLAATSARLRDFAKLLGVDFEFVP-LLRQVHEL 376
                     ***************************************887769********9988888999***********************.599***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + ++++v+p+Ea+aVn++lql++ll   ++++++ ++vL+l kslsP vv++ e e+++n++ F++rf++al yy  +f+sl++ ++r+s er+ 
  Pahal.I01943.1 377 DRSDFSVEPDEAVAVNFMLQLYHLL---GDSDEPVRRVLRLAKSLSPSVVTLGEYEVSLNRAGFVDRFANALCYYKPVFESLDVAMARDSPERVR 468
                     *************************...66666777*********************************************************** PP

            GRAS 285 vErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                     vEr ++g++i+ +v   egaer+ r+   ++W+  +e +GF+pv+ls++a +qa+ ll +++ +  y++ e   +++ l W++rpL++vSaWr
  Pahal.I01943.1 469 VERCMFGERIRRAVGpEEGAERTDRMAASMEWQTLMEWCGFEPVKLSNYARSQADFLLWNYDaKYKYSLVELPPAFLsLAWEKRPLLTVSAWR 561
                     **************8356899*****************************************88889999*9999988**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.259164539IPR005202Transcription factor GRAS
PfamPF035141.3E-104192561IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQQQQQHQ RHHHHHHHHL PPPPMQLPPR QAPPMPPAPA  60
PPHGQIPATA LPYGGGAWPH SEHFFSDSFV GASAADAVFS DLAAAADFDS DVWMDSLIGD  120
PPFADSDLDR LIFTTPPPPV PVPAPAAAPV DVAAQPGAAA PAPLPQTAAV AAPAACSSPS  180
SLDVSCSEPV LQSLLACSRT AAADPALAAV ELVKVRAAAS DDGDPAERVA FYFADALARR  240
LACGGGAQTS TSSDDRFASD ELTLCYKTLN DACPYSKFAH LTANQAILEA TGTATKIHIV  300
DFGIVQGIQW AALLQALATR PEGKPSRVRI SGVPSPYLGQ KPAASLAATS ARLRDFAKLL  360
GVDFEFVPLL RQVHELDRSD FSVEPDEAVA VNFMLQLYHL LGDSDEPVRR VLRLAKSLSP  420
SVVTLGEYEV SLNRAGFVDR FANALCYYKP VFESLDVAMA RDSPERVRVE RCMFGERIRR  480
AVGPEEGAER TDRMAASMEW QTLMEWCGFE PVKLSNYARS QADFLLWNYD AKYKYSLVEL  540
PPAFLSLAWE KRPLLTVSAW RAKITTRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01875611375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270180.0KJ727018.1 Zea mays clone pUT3999 GRAS transcription factor (GRAS55) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794605.10.0SCARECROW-LIKE protein 7
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A2T8I0U40.0A0A2T8I0U4_9POAL; Uncharacterized protein
STRINGSb01g009740.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-133GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]