PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01639.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 316aa MW: 32273.2 Da PI: 7.6402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01639.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.4	8e-06	165	210	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 a n+r r RR+++ +++ L++l+ + +K + a++L +A YI+ L Pahal.I01639.1 165 ATNKRPRVRREKLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 210 679*********************8.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.493	161	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-12	165	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-8	166	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.3E-6	167	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.42E-5	167	215	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVKEEEIVAE AGGRGYMDLL GLGEEDYLLC LSPSSYFSSS VVSTTTTSAT PAAASSPTCA 60 SYLDLAPAYH HMLSFAGQEQ YHGSDGVFGF QYHGGDQAGI PVAVPQKSSP TTECSSSISS 120 MSSSPPATTI SAISSPKPQA FKKKGSRISD QRKAAPAAVA TTAAATNKRP RVRREKLGER 180 IIALQQLVSP FGKSDTASVL HEALGYIRFL HDQVQALSSP YMQRLPVSAH APAQEGAAGT 240 VVEPPRASDL RSRGLCLVPI SCTEHVAGGG HGHGNGADLW SVAAGAAKAA AENKGAAAAA 300 AGTLPGAGGH PGYLA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794178.1	0.0	transcription factor bHLH113-like
TrEMBL	A0A2S3IHU9	0.0	A0A2S3IHU9_9POAL; Uncharacterized protein
STRING	Pavir.Ia00382.1.p	1e-157	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8082	25	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	5e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.I01639.1