PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.I01503.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 345aa MW: 38707.4 Da PI: 6.9368

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.I01503.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.2	1.1e-51	36	164	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeelv++yL++kv++k+l++ e+ike+diyk++PwdLp ++++++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ Pahal.I01503.1 36 LPGFRFHPTDEELVTFYLRRKVARKPLSI-EIIKEMDIYKHDPWDLPkASTAGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSA 129 69*************************.89***********556667899*********************************99 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ge +glkk+Lv+y+g+a kg+ktdW+mhe+rl Pahal.I01503.1 130 tsSGESIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 164 888899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-56	35	191	IPR003441	NAC domain
PROSITE profile	PS51005	55.93	35	191	IPR003441	NAC domain
Pfam	PF02365	3.9E-25	37	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVAKEFGREV ISMDKVKTDG EALIAAGDEE EDDVVLPGFR FHPTDEELVT FYLRRKVARK 60 PLSIEIIKEM DIYKHDPWDL PKASTAGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT 120 GIDRPIYSAT SSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPAATA ANSSPSMQEA 180 EVWTICRIFK RNITYKRQQP QQVWRQPVAT GTCLPPADSS SNTGSFESDG GDEYMNCLPA 240 AAPSVPRQHH FSNQINMLNG GGGGGFFRDS VHSHQQFQGQ WFNSLPAPAI EQKPQLNSPA 300 TTIAFHQNDQ SLAANDCYKD GYWDEIARFM EVNDPAVFYD CRYA*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVAKEFGREV ISMDKVKTDG EALIAAGDEE EDDVVLPGFR FHPTDEELVT FYLRRKVARK  60
PLSIEIIKEM DIYKHDPWDL PKASTAGGEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT  120
GIDRPIYSAT SSGESIGLKK SLVYYRGSAG KGTKTDWMMH EFRLPPAATA ANSSPSMQEA  180
EVWTICRIFK RNITYKRQQP QQVWRQPVAT GTCLPPADSS SNTGSFESDG GDEYMNCLPA  240
AAPSVPRQHH FSNQINMLNG GGGGGFFRDS VHSHQQFQGQ WFNSLPAPAI EQKPQLNSPA  300
TTIAFHQNDQ SLAANDCYKD GYWDEIARFM EVNDPAVFYD CRYA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-48	37	192	19	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-48	37	192	19	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-48	37	192	19	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-48	37	192	19	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-48	37	192	22	169	NAC domain-containing protein 19
3swm_B	1e-48	37	192	22	169	NAC domain-containing protein 19
3swm_C	1e-48	37	192	22	169	NAC domain-containing protein 19
3swm_D	1e-48	37	192	22	169	NAC domain-containing protein 19
3swp_A	1e-48	37	192	22	169	NAC domain-containing protein 19
3swp_B	1e-48	37	192	22	169	NAC domain-containing protein 19
3swp_C	1e-48	37	192	22	169	NAC domain-containing protein 19
3swp_D	1e-48	37	192	22	169	NAC domain-containing protein 19
4dul_A	1e-48	37	192	19	166	NAC domain-containing protein 19
4dul_B	1e-48	37	192	19	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT055579	1e-180	BT055579.1 Zea mays full-length cDNA clone ZM_BFc0046N12 mRNA, complete cds.
GenBank	HQ858689	1e-180	HQ858689.1 Zea mays clone UT1145 NAC transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795725.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	5e-85	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2S3IHK9	0.0	A0A2S3IHK9_9POAL; Uncharacterized protein
STRING	Pavir.J26531.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1191	38	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	7e-82	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Pahal.I01503.1

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]