PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I01400.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 30096 Da PI: 6.3705 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.1 | 1.6e-08 | 132 | 176 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR+ri +++ L+el+P+ K + a++L + +Y+k L Pahal.I01400.2 132 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 176 99***********************7.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.76E-15 | 125 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-10 | 125 | 181 | No hit | No description |
PROSITE profile | PS50888 | 15.77 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-14 | 129 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-6 | 132 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-9 | 133 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0031347 | Biological Process | regulation of defense response | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MAGQPPQGPE DDFLDQFFSM AGGSYSATAA GGGRAAGDQP FSLALSLDAA AAEASGSGKH 60 EEGGKADREA VQLPGLFPPV FGGGVQPPHL RPSPPTQVFH AQQPKQGGAV GPQPPAPRPK 120 VRARRGQATD PHSIAERLRR ERIAERMRAL QELVPNTNKT DRAAMLDEIL DYVKFLRLQV 180 KVLSMSRLGG AGAVAQLVAD IPLSVKGEAS DSGSKQQIWE KWSTDGTERQ VAKLMEEDIG 240 AAMQFLQSKA LCMMPISLAM AIYDTQHSQD DQPVKPEPNT PS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 136 | 141 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973411 | 0.0 | EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793109.1 | 0.0 | transcription factor UNE12-like isoform X2 | ||||
Swissprot | O22768 | 7e-76 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2S3IH98 | 0.0 | A0A2S3IH98_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G004356_P01 | 1e-179 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-55 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I01400.2 |
Publications ? help Back to Top | |||
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