PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01400.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 290aa    MW: 30790.8 Da    PI: 6.6905
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08139183554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Pahal.I01400.1 139 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 183
                     99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-15132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-10132188No hitNo description
PROSITE profilePS5088815.77134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14136194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6139183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAGQPPQGPE DDFLDQFFSM AGGSYSATAA GGGRAAGDQP FSLALSLDAA AAEASGSGKH  60
EEGGKAVRAP PSSDREAVQL PGLFPPVFGG GVQPPHLRPS PPTQVFHAQQ PKQGGAVGPQ  120
PPAPRPKVRA RRGQATDPHS IAERLRRERI AERMRALQEL VPNTNKTDRA AMLDEILDYV  180
KFLRLQVKVL SMSRLGGAGA VAQLVADIPL SVKGEASDSG SKQQIWEKWS TDGTERQVAK  240
LMEEDIGAAM QFLQSKALCM MPISLAMAIY DTQHSQDDQP VKPEPNTPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143148RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9734110.0EU973411.1 Zea mays clone 398294 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793108.10.0transcription factor UNE12-like isoform X1
SwissprotO227682e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2S3IH710.0A0A2S3IH71_9POAL; Uncharacterized protein
STRINGGRMZM2G004356_P011e-176(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.33e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]