PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01237.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 182aa    MW: 19453.8 Da    PI: 7.9669
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01237.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00125779123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ F++   L  H  +H
  Pahal.I01237.1 57 FVCKTCSRAFTSFQALGGHRTSH 79
                    89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-55383No hitNo description
PfamPF139128.0E-105781IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0765784IPR007087Zinc finger, C2H2
SMARTSM003550.615779IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SuperFamilySSF576679.93E-5113141No hitNo description
PfamPF139122.8E-8115141IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224116143IPR007087Zinc finger, C2H2
SMARTSM003552.3116138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKHPREQQEE EVSLALSLST TTDSCTTSDS SAAAPPAAKR ARRRRGPVVA TSGEGEFVCK  60
TCSRAFTSFQ ALGGHRTSHL RGRHGLELGV GAKALKQHKA AGGGDKQQQQ QQHQTHDCHI  120
CGLGFELGQA LGGHMRRHRE EMGAAEAADA WVWRSVARLP EELEVQSAAA ADPPVLLELF  180
A*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9574022e-58EU957402.1 Zea mays clone 1590997 ZFP16-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795976.11e-129zinc finger protein ZAT5-like
TrEMBLA0A2S3IGP51e-128A0A2S3IGP5_9POAL; Uncharacterized protein
STRINGPavir.J00894.1.p1e-102(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.15e-18C2H2 family protein