PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I01221.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 393aa    MW: 43011.9 Da    PI: 7.1108
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I01221.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-17109158155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Pahal.I01221.2 109 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 158
                     78*******************......55************************998 PP
2AP242.71.4e-13201251155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+++++g
  Pahal.I01221.2 201 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDRAALRFNG 251
                     89********.7******...5...334336**********99***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-9109158IPR001471AP2/ERF domain
CDDcd000186.43E-11109165No hitNo description
SuperFamilySSF541719.81E-16109166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.5E-17110166IPR001471AP2/ERF domain
PROSITE profilePS5103217.728110166IPR001471AP2/ERF domain
SMARTSM003808.2E-31110172IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-17201260IPR016177DNA-binding domain
PfamPF008474.3E-9201251IPR001471AP2/ERF domain
CDDcd000181.10E-25201261No hitNo description
Gene3DG3DSA:3.30.730.103.1E-16202259IPR001471AP2/ERF domain
SMARTSM003805.2E-33202265IPR001471AP2/ERF domain
PROSITE profilePS5103216.436202259IPR001471AP2/ERF domain
PRINTSPR003671.6E-6203214IPR001471AP2/ERF domain
PRINTSPR003671.6E-6241261IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVLDLNVASP EDSGTSSSSV LNSGDGGFRF GLLGSPVDDD DCSGEMAPGA SSGFMTRQLF  60
PPPTPPPEPE RAAAPVPVWQ PRRAEDLGVA QRPVAAAKKT RRGPRSRSSQ YRGVTFYRRT  120
GRWESHIWDC GKQVYLGGFD TAHAAARAYD RAAIKFRGLE ADINFSLGDY EDDLKQMRNW  180
TKEEFVHILR RQSTGFARGS SKYRGVTLHK CGRWEARMGQ LLGKKYIYLG LFDSEVEAAR  240
AYDRAALRFN GREAVTNFEP SSYNAGHALP DTENEAIVDA DAVDLDLRIS QPNVQDPKRD  300
STLAGLQATC DSPESSNTMT TQERTMERRP EPGAQPFPTW AWQMQGSPHM PLHHSAASSG  360
FSTAPGGASG GVPLPSHPPA AQFPIHHQFF FP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278380.0KJ727838.1 Zea mays clone pUT5791 AP2-EREBP transcription factor (EREB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792820.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ84TB51e-165AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A2T7BZ340.0A0A2T7BZ34_9POAL; Uncharacterized protein
STRINGPavir.J23520.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-88related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]