PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00738.6
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 26021.5 Da    PI: 8.4768
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00738.6genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.42.5e-251261251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  Pahal.I00738.6 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61
                    89********************************************9986 PP
2K-box50.49.7e-18921731798
           K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      +   a+L++e+ +   ++R+l Ge+L++Ls+++Lq+Le+ Le++l ++R++K++ +l++i+ l +k  +l een +L++++
  Pahal.I00738.6  92 DDSTCARLREELAEASLKLRQLRGEELQRLSVQQLQELEKTLESGLGSVRKTKSQKILDEINGLERKRMQLIEENSRLKEQV 173
                     4567899************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-33362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.137363IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24525IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.76E-29584IPR002100Transcription factor, MADS-box
CDDcd002653.22E-37571No hitNo description
PfamPF003191.6E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS5129712.54689179IPR002487Transcription factor, K-box
PfamPF014861.3E-1695173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA  60
SSSMNQIIDR YDCHSKTLQK SEAPAQLQSH VDDSTCARLR EELAEASLKL RQLRGEELQR  120
LSVQQLQELE KTLESGLGSV RKTKSQKILD EINGLERKRM QLIEENSRLK EQVTRMTRME  180
MQLGADSEVV YEEGQSSESV TNASYPRPSA DTDDGGSDTS LRLGLPLFSS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18571369MEF2C
5f28_B2e-18571369MEF2C
5f28_C2e-18571369MEF2C
5f28_D2e-18571369MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360480.0BT036048.1 Zea mays full-length cDNA clone ZM_BFb0093D17 mRNA, complete cds.
GenBankBT0873240.0BT087324.1 Zea mays full-length cDNA clone ZM_BFb0039N23 mRNA, complete cds.
GenBankBT0878520.0BT087852.1 Zea mays full-length cDNA clone ZM_BFb0227O08 mRNA, complete cds.
GenBankEU9561480.0EU956148.1 Zea mays clone 1558111 MADS-box transcription factor 47 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025793844.11e-167MADS-box transcription factor 47-like isoform X2
SwissprotQ5K4R01e-123MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A2S3ITJ31e-166A0A2S3ITJ3_9POAL; Uncharacterized protein
STRINGPavir.Ia04527.1.p1e-159(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]