PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.I00738.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26021.5 Da PI: 8.4768 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.5e-25 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s Pahal.I00738.3 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61 89********************************************9986 PP | |||||||
2 | K-box | 50.4 | 9.7e-18 | 92 | 173 | 17 | 98 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + a+L++e+ + ++R+l Ge+L++Ls+++Lq+Le+ Le++l ++R++K++ +l++i+ l +k +l een +L++++ Pahal.I00738.3 92 DDSTCARLREELAEASLKLRQLRGEELQRLSVQQLQELEKTLESGLGSVRKTKSQKILDEINGLERKRMQLIEENSRLKEQV 173 4567899************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-33 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.137 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-29 | 5 | 84 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.22E-37 | 5 | 71 | No hit | No description |
Pfam | PF00319 | 1.6E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-24 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.546 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.3E-16 | 95 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA 60 SSSMNQIIDR YDCHSKTLQK SEAPAQLQSH VDDSTCARLR EELAEASLKL RQLRGEELQR 120 LSVQQLQELE KTLESGLGSV RKTKSQKILD EINGLERKRM QLIEENSRLK EQVTRMTRME 180 MQLGADSEVV YEEGQSSESV TNASYPRPSA DTDDGGSDTS LRLGLPLFSS K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-18 | 5 | 71 | 3 | 69 | MEF2C |
5f28_B | 2e-18 | 5 | 71 | 3 | 69 | MEF2C |
5f28_C | 2e-18 | 5 | 71 | 3 | 69 | MEF2C |
5f28_D | 2e-18 | 5 | 71 | 3 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036048 | 0.0 | BT036048.1 Zea mays full-length cDNA clone ZM_BFb0093D17 mRNA, complete cds. | |||
GenBank | BT087324 | 0.0 | BT087324.1 Zea mays full-length cDNA clone ZM_BFb0039N23 mRNA, complete cds. | |||
GenBank | BT087852 | 0.0 | BT087852.1 Zea mays full-length cDNA clone ZM_BFb0227O08 mRNA, complete cds. | |||
GenBank | EU956148 | 0.0 | EU956148.1 Zea mays clone 1558111 MADS-box transcription factor 47 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025793844.1 | 1e-167 | MADS-box transcription factor 47-like isoform X2 | ||||
Swissprot | Q5K4R0 | 1e-123 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | A0A2S3ITJ3 | 1e-166 | A0A2S3ITJ3_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia04527.1.p | 1e-159 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-68 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.I00738.3 |
Publications ? help Back to Top | |||
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