PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00707.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 297aa    MW: 31767 Da    PI: 4.2741
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00707.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1867117155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GVr+++ +g+W+Ae+rdp+    r  r++lg+f tae Aa+a++ a++ l+g
  Pahal.I00707.1  67 SQYHGVRQRP-WGKWAAEVRDPV----RgVRVWLGTFATAEAAARAYDDAARDLRG 117
                     78********.**********63....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.53E-1567127No hitNo description
SuperFamilySSF541712.68E-2167126IPR016177DNA-binding domain
PfamPF008472.1E-1268117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-3168126IPR001471AP2/ERF domain
PROSITE profilePS5103223.22268125IPR001471AP2/ERF domain
SMARTSM003806.8E-3268131IPR001471AP2/ERF domain
PRINTSPR003672.0E-106980IPR001471AP2/ERF domain
PRINTSPR003672.0E-1091107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MCGGAILAEL IPSGGRRGAP AAAAKDDDFE AAFQEFDEDS EEEVVMLTER KAFALGAAGA  60
RRNRRPSQYH GVRQRPWGKW AAEVRDPVRG VRVWLGTFAT AEAAARAYDD AARDLRGAGA  120
KLNFPSSDTA RTRKRRAAVK PTPYVDLVDG DDALGTHAPS VKNEAAETCG TISGDSSCGS  180
LPEFSWQGMS ATDDVVARPD ADFRVEPDMS VELGCPSKRA RTEPQEEEVV APPAAAEGSA  240
ALLFDAFMFG DQFSFFDGGA YESLDGLFGG DAVESNQSAV LWSFDDDRLV EDTMCY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1867125463ATERF1
3gcc_A1e-1867125463ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0876882e-59BT087688.1 Zea mays full-length cDNA clone ZM_BFb0158A18 mRNA, complete cds.
GenBankJX4699182e-59JX469918.1 Zea mays subsp. mays clone UT3174 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795465.10.0dehydration-responsive element-binding protein 2D-like
TrEMBLA0A2S3ITL10.0A0A2S3ITL1_9POAL; Uncharacterized protein
STRINGPavir.J12680.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-16ERF family protein