PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00680.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 449aa    MW: 48283.1 Da    PI: 8.5966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.1e-116285326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++ C++++rtG C++G +CkF+H+
  Pahal.I00680.1 62 EPDCSYYMRTGMCRFGMTCKFNHP 85
                    789********************8 PP
2zf-CCCH39.41e-12106131227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tGtCk+G++CkF+H++
  Pahal.I00680.1 106 GQPECQYYLKTGTCKFGATCKFHHPR 131
                     5799********************96 PP
3zf-CCCH36.67.7e-12153177327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+Ck+G++CkF+H++
  Pahal.I00680.1 153 EKECAYYLRTGQCKFGSTCKFHHPQ 177
                     679********************97 PP
4zf-CCCH39.21.1e-12314339227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+f+++tG Ck+G+ CkF+H++
  Pahal.I00680.1 314 DQPECQFYMKTGDCKFGAVCKFHHPR 339
                     689*********************96 PP
5zf-CCCH37.44.2e-12359384126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+f++r+G Ck+G++CkF H+
  Pahal.I00680.1 359 PGEPICNFYSRYGMCKFGPNCKFDHP 384
                     5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-45986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0565987IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-76285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-56487IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-46586IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.77104132IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-10106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6108133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-5110132IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-5150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.582150178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6150179IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9153177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4156176IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.53312340IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5315341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4318340IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6357384IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-7358385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516358386IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8360384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4363383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAAPSAGAGG GGGGAGEGSS SSAAAAAAAA TIGAHGLDQE AMWQMNLGEA VELGPYPERI  60
GEPDCSYYMR TGMCRFGMTC KFNHPADRKL AVAAARMKGE YPQRNGQPEC QYYLKTGTCK  120
FGATCKFHHP REKAAMATRV QLNELGYPFR PSEKECAYYL RTGQCKFGST CKFHHPQPST  180
MMVAVRGSGY SPGQSVTSPG QHAYQGAVTS WPLSRSASFI ASPRWPGHSS YAQVIVPPGL  240
VQVQGWNPYT AQIGSSSSED QQRTPGAAQY YTGSRQSGTP GIGDQGMFSS YQAGSVPVGL  300
YAVQRENVFP ERPDQPECQF YMKTGDCKFG AVCKFHHPRE RIIPTPNCAL SSLGLPLRPG  360
EPICNFYSRY GMCKFGPNCK FDHPIGTVMY GHASSPTSEV PTSRRMLAHV PSHPEVSPDN  420
GSGRSRRITH SDSQQIPSGE RSTEREAS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341780.0BT034178.1 Zea mays full-length cDNA clone ZM_BFc0032H13 mRNA, complete cds.
GenBankBT0608430.0BT060843.1 Zea mays full-length cDNA clone ZM_BFb0059K13 mRNA, complete cds.
GenBankBT0642190.0BT064219.1 Zea mays full-length cDNA clone ZM_BFc0149L04 mRNA, complete cds.
GenBankBT0857450.0BT085745.1 Zea mays full-length cDNA clone ZM_BFc0056E16 mRNA, complete cds.
GenBankEU9569840.0EU956984.1 Zea mays clone 1579587 zinc finger CCCH type domain-containing protein ZFN-like mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827475.10.0zinc finger CCCH domain-containing protein 63 isoform X3
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A2S3IE370.0A0A2S3IE37_9POAL; Uncharacterized protein
STRINGPavir.J23327.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-156zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]