PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00430.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 128aa    MW: 13725.2 Da    PI: 6.9385
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20959255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr ++ +g+++AeIrdp  +    r++lg+f+taeeAa+a+++a+ +++g
  Pahal.I00430.1  9 KYRGVRKRP-WGKFAAEIRDPERG--GSRVWLGTFDTAEEAARAYDRAAFAMKG 59
                    8********.**********8333..4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.4E-36973IPR001471AP2/ERF domain
CDDcd000187.99E-30968No hitNo description
SuperFamilySSF541711.44E-23968IPR016177DNA-binding domain
PROSITE profilePS5103224.46967IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-32967IPR001471AP2/ERF domain
PfamPF008479.3E-15959IPR001471AP2/ERF domain
PRINTSPR003673.6E-121021IPR001471AP2/ERF domain
PRINTSPR003673.6E-123349IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MEDDKKEGKY RGVRKRPWGK FAAEIRDPER GGSRVWLGTF DTAEEAARAY DRAAFAMKGA  60
TAVLNFPAGA ATMSGGGSSS SAPAAAAGAA SRGRTTRVPD SEKVELEYLD DRILEELLAE  120
DKYSKNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-30611311114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275121e-95KJ727512.1 Zea mays clone pUT5371 AP2-EREBP transcription factor (EREB95) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797533.15e-86ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-35ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A2S3IUL61e-84A0A2S3IUL6_9POAL; Uncharacterized protein
TrEMBLA0A3L6SED71e-84A0A3L6SED7_PANMI; Uncharacterized protein
STRINGSb01g046920.12e-59(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.13e-23Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]