PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00419.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 605aa    MW: 64783.2 Da    PI: 7.7842
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00419.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-05493518123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++C+  +C ++F++k +L +H ++ +
  Pahal.I00419.1 493 FECNidYCRMTFKTKAELSVHKKNmC 518
                     89*******************99866 PP
2zf-C2H211.20.0012576600123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ykC+   C+k ++  s+++rH r++
  Pahal.I00419.1 576 YKCTtpGCNKIYKFVSDFTRHRRRC 600
                     99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035522493515IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.427516545IPR007087Zinc finger, C2H2
SMARTSM003552.4516540IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4517540IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280518540IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-14527580No hitNo description
Gene3DG3DSA:3.30.160.608.4E-11541567IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1E-4546570IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.676546575IPR007087Zinc finger, C2H2
PROSITE patternPS000280548570IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-8568598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035530576598IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MRIRRYAARL LSSTSPTAAA APSSPPPPPA ASWLHAAADD CCAFCELSRP APQEGADAIK  60
HKGHIAGRVP ESDVGGDERV REAQQPPAPE VKKCKTDHGR NVNKISVGLQ ALRASGISET  120
AVKPEVAGGA TLVSEADAEP AVKPGTFIAN DAAIEQEVNC KFSLVNDAAK PEVTGVDSLL  180
NGSTTELEVL EGAPFANEVA HDQEVTEKVS PESKAATVPE VTSIAAEVTG VPSPMNKSGT  240
ILEVIRRTSL GKVVTDPGVT ITMLRTGSLS TEGADGPEVT GAASIMQETT KLESVGEDYV  300
ASKAAAEPEN SSRASSNVDD TATLDEPQLS SCNPNIVNMQ LGNAGETVAS TVQPSGCDAL  360
KVSTSVNSLS NGPVGAKGPT VEGGLSNDGF VKPSVSCVYD IVARSIGTSG RSDVICYARR  420
RGKRKLELLE VKTENIELED RVICKEETLG RTGCCESVLS TAGSVDVKLA DIKKELMDNS  480
AASKVKKMKR NRFECNIDYC RMTFKTKAEL SVHKKNMCTV KSCSRNFRSH RYLRRHQSVH  540
NDDMPYKCPW DGCGMSFKWS WDRAEHFKVH AGVKPYKCTT PGCNKIYKFV SDFTRHRRRC  600
KPQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-4249359923129Lysine-specific demethylase REF6
6a58_A1e-4249359923129Lysine-specific demethylase REF6
6a59_A1e-4249359923129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418424RRRGKRK
2418425RRRGKRKL
3485491KKMKRNR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792345.10.0uncharacterized protein LOC112873563
TrEMBLA0A2S3IU920.0A0A2S3IU92_9POAL; Uncharacterized protein
STRINGPavir.J38242.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.14e-41relative of early flowering 6