PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.I00096.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 765aa    MW: 80131.9 Da    PI: 6.9617
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.I00096.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.41.1e-2987171187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+laL+++r+em+ ++r+++lk+plWe+vs+++++ g++rs+k+C+ek+en+ k+yk++k+g+ +r  ++ + +++f++lea
  Pahal.I00096.1  87 RWPRQETLALLKIRSEMDAAFREAALKGPLWEQVSRRLEAMGYKRSAKKCREKFENVDKYYKRTKDGRAGR--GDGKAYRFFSELEA 171
                     8********************************************************************97..66667******985 PP
2trihelix107.21.1e-33470555187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r+e+e r++++  k+plWe++s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy++ql+a
  Pahal.I00096.1 470 RWPKAEVHALIQLRTELEARYQDSGPKGPLWEDISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESDKKR-PEDSKTCPYYHQLDA 555
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.81880144IPR017877Myb-like domain
SMARTSM007170.005784146IPR001005SANT/Myb domain
PfamPF138372.1E-2086172No hitNo description
CDDcd122032.16E-2786151No hitNo description
SMARTSM007170.0026467529IPR001005SANT/Myb domain
CDDcd122031.20E-32469534No hitNo description
PROSITE profilePS500907.201469527IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.609.7E-4470526IPR009057Homeodomain-like
PfamPF138371.0E-23470556No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MQQPGMPPFS PAAGTPVGVG QKASTPAPAP PPISSRPPEG QQQQQVVDEL GAGATASAGG  60
GSSFADHEAG MSAGGDEGDR GGPSGNRWPR QETLALLKIR SEMDAAFREA ALKGPLWEQV  120
SRRLEAMGYK RSAKKCREKF ENVDKYYKRT KDGRAGRGDG KAYRFFSELE ALHGASSSPA  180
PHPPASSLAA TPVAMAPPAT PLAVLGAPGM APAMHAEPPP RVASVPQPAP LMSGTTTAPA  240
AAATAAASDA ACMMTPGDVS FSSGSDGEDT EDTGDGGKRK RHGGDVGGSG SIKMMRFFEG  300
LMRQVMERQE EMQQRFIEAI EKREQDRMIR EEAWRRQEVA RLAREQDALA QERAMAASRD  360
AAVVSFIQRV TGQTIPMPSV APPAFIGALT HPPLQPTPVA SAAPAPAQHQ QPPSIQLSPK  420
THTMPKPAQP QPQHQTPPPA QPQSKEIIVR APAESQDTAG SGGGTPSPSR WPKAEVHALI  480
QLRTELEARY QDSGPKGPLW EDISAGMRRL GYNRSAKRCK EKWENINKYF KKVKESDKKR  540
PEDSKTCPYY HQLDALYRSK ALASSGAGGV AAAAAPRPDH QAGVTVLAAV PLSQTAPHAE  600
HGGKQDCSNG NGSGCAGRGS SDNGGSSGGM QTQASNGRFS VEGAGGNGAA SNKLQQGITI  660
TKETAATEPR PQPVSMNDSY VNDTVDSDSS MDDGDEEDEF DDDDEGNVGG GGGGNSKMQY  720
EIQFQRQQQG QSSVVRPNAS GAAGSSGPGP AAATSGSFLT MVHH*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9516591e-128EU951659.1 Zea mays clone 988816 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791925.10.0trihelix transcription factor GTL1-like
TrEMBLA0A2S3IUZ00.0A0A2S3IUZ0_9POAL; Uncharacterized protein
STRINGSi034382m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-47Trihelix family protein