PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02664.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 223aa    MW: 25195.5 Da    PI: 9.9247
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02664.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.41.3e-1199140351
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +GV++  k+ +W A I++      +k+++lg+ gt +eAa+++++a+ 
  Pahal.H02664.2  99 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQDEAARLYDRAAF 140
                     79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.96674153IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-898143IPR016177DNA-binding domain
SMARTSM003801.3E-498155IPR001471AP2/ERF domain
PfamPF008477.0E-698141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-6101145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGKDSLP VDLPKPIENE KPVDVAHSNV KPFSVHPLPP TKTSDVLTKS  60
SNGSDDSKEE KTQYYPGKEI KRRKRHRRKQ YVDQEPCIMR GVYFKNMKWQ AAIKVDKKQI  120
HLGTVGTQDE AARLYDRAAF MCGREPNFEL SEEEKQELRK YTWEDFLAIT RNTITSKKQR  180
KVGLLRRSKA DLFMGQSDGD TEMANGGGSS NSDNGEAETS AS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0648790.0BT064879.1 Zea mays full-length cDNA clone ZM_BFb0311A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794632.11e-167ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A2T7F6751e-165A0A2T7F675_9POAL; Uncharacterized protein
TrEMBLA0A2T8KVY61e-163A0A2T8KVY6_9POAL; Uncharacterized protein
STRINGPavir.Aa01947.1.p1e-164(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.28e-47ERF family protein