PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H02433.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 697aa MW: 76881.9 Da PI: 7.246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H02433.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.6	7.8e-27	69	159	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY++YA+++GF++r+s+ ++s+r+++i++r+ vCskeg++e++ + +++++++ra tr+gCka++++kk gkw+vtk++++HnH Pahal.H02433.1 69 DFYSTYATNAGFRIRISRYTRSRRDNSIISRRIVCSKEGFHETHGCDglhSDQKQHERAGTRVGCKAMIMIKKFGPGKWMVTKFVKNHNHG 159 6****************************************99999999999**********************************5 PP
2	FAR1	89.6	4.3e-28	207	299	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eHnH+l+ Pahal.H02433.1 207 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRTKKvttdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEHNHSLS 299 9*****************************************999998889999********************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.4E-24	69	159	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	4.5E-26	207	299	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence Send to blast
MVVMEETVIR IASESKPGNG QDPLTELPRA METLVAHGHE VEKLIGLEED TELTPCEGME 60 FESEDAARDF YSTYATNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE THGCDGLHSD 120 QKQHERAGTR VGCKAMIMIK KFGPGKWMVT KFVKNHNHGP VPPRKLDSRP VNEDCDPMEK 180 PHPIDVDSVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC 240 SKEGFREVRT KKVTTDEGKT KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLSY 300 SKMIPITSNV TSGEVAHFDA KSADPNDVKN EGHGEGTQCN HADSLTVLYN NLCQEAIKFA 360 KEGSVTEEIY HVAVSALKEA AEKVAEVKRS RPMAHRGFIS ESKHDVLHVK TMSTLQCSNQ 420 VELKTTSLGS RPFQESANNL LLVPTNILTD SRLHNRVNNV PLSSDFSSNG RQGRHTTEGS 480 FMHFDNIKET SSQKSQNTRS NQAIHGKDEG IRGSSEETMV AIPAIPLALC MPMMQNLPGS 540 SADGPYRLLA APIEAVPISY RPAEPVRQPQ KGVCALGPFA GVLTELNKRG TGPNSLVHAT 600 ALACGARVVP LEEAASLISA VQSKIRSGGA IIAKLPSSNL SFPVPPAIAM SSSSEGEENG 660 HSEPLMVDIN RNCHDQSSDE MKLQSEPSEL ETEADN*

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence Send to blast

MVVMEETVIR IASESKPGNG QDPLTELPRA METLVAHGHE VEKLIGLEED TELTPCEGME  60
FESEDAARDF YSTYATNAGF RIRISRYTRS RRDNSIISRR IVCSKEGFHE THGCDGLHSD  120
QKQHERAGTR VGCKAMIMIK KFGPGKWMVT KFVKNHNHGP VPPRKLDSRP VNEDCDPMEK  180
PHPIDVDSVE EPFEGMEFES EEAAKLFYVN YARLNGFRAR ISRYCRSRRD NSIISRQIVC  240
SKEGFREVRT KKVTTDEGKT KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLSY  300
SKMIPITSNV TSGEVAHFDA KSADPNDVKN EGHGEGTQCN HADSLTVLYN NLCQEAIKFA  360
KEGSVTEEIY HVAVSALKEA AEKVAEVKRS RPMAHRGFIS ESKHDVLHVK TMSTLQCSNQ  420
VELKTTSLGS RPFQESANNL LLVPTNILTD SRLHNRVNNV PLSSDFSSNG RQGRHTTEGS  480
FMHFDNIKET SSQKSQNTRS NQAIHGKDEG IRGSSEETMV AIPAIPLALC MPMMQNLPGS  540
SADGPYRLLA APIEAVPISY RPAEPVRQPQ KGVCALGPFA GVLTELNKRG TGPNSLVHAT  600
ALACGARVVP LEEAASLISA VQSKIRSGGA IIAKLPSSNL SFPVPPAIAM SSSSEGEENG  660
HSEPLMVDIN RNCHDQSSDE MKLQSEPSEL ETEADN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797822.1	0.0	uncharacterized protein LOC112877680
TrEMBL	A0A2S3ISD8	0.0	A0A2S3ISD8_9POAL; Uncharacterized protein
STRING	Pavir.Ia03883.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	6e-24	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	Pahal.H02433.1