PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H02252.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 291aa    MW: 30457.3 Da    PI: 8.4911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H02252.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-12136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
   Pahal.H02252.1 136 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 180
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.44866IPR001005SANT/Myb domain
SuperFamilySSF466893.4E-51270IPR009057Homeodomain-like
PROSITE profilePS500905.7381264IPR017877Myb-like domain
PROSITE profilePS5129416.873129185IPR017930Myb domain
SuperFamilySSF466896.89E-17131186IPR009057Homeodomain-like
SMARTSM007172.3E-10133183IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.9E-17133183IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.1E-11134179IPR009057Homeodomain-like
PfamPF002497.0E-11136180IPR001005SANT/Myb domain
CDDcd001679.18E-10136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MTTLSTTTAA AWTREEDKAF ENAVAAAAAP PADGPPDDGW FTALAASVPA RTAEEVRRHY  60
EALLEDVASI EAGRVPLPRY AGEESSAATP DSAAGAASTP KDGGGGGGHR REERKSVVDV  120
GKSCSKAEQE RRKGIPWTEE EHRLFLLGLD KFGKGDWRSI SRNFVISRTP TQVASHAQKY  180
FIRLNSMNRD RRRSSIHDIT SVTAGEVAAA GAPITGGPAA AGAMPMGPAG MKHHHPGPPM  240
GMYGHAPMGH PVAGHMVAPA AVGTPVMFPP GHSPYVVPVG YPAPPAKMHQ *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}.
UniProtTranscription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0553330.0BT055333.2 Zea mays full-length cDNA clone ZM_BFb0024K03 mRNA, complete cds.
GenBankKJ7275370.0KJ727537.1 Zea mays clone pUT5397 MYB-related transcription factor (MYBR76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819847.10.0transcription factor MYBS1-like
SwissprotB8A9B21e-125MYBS1_ORYSI; Transcription factor MYBS1
SwissprotQ8LH591e-125MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBLA0A2S3HVA10.0A0A2S3HVA1_9POAL; Uncharacterized protein
TrEMBLA0A3L6R3I30.0A0A3L6R3I3_PANMI; Uncharacterized protein
STRINGPavir.Eb01413.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94663041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.13e-56MYB family protein
Publications ? help Back to Top
  1. Hong YF, et al.
    Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals.
    Plant Cell, 2012. 24(7): p. 2857-73
    [PMID:22773748]