PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.H02089.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 258aa MW: 27921.9 Da PI: 5.1818 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.3 | 3e-16 | 97 | 146 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr ++ +g+++AeIrd + +g +r++lg+f+t+e Aa a+++a+ + +g Pahal.H02089.1 97 FIGVRKRP-WGKFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDHAAYAARG 146 57******.**********43343..**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.535 | 96 | 154 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-28 | 96 | 160 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.0E-11 | 97 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-8 | 97 | 108 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.70E-12 | 97 | 131 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-27 | 97 | 155 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-20 | 97 | 156 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.8E-8 | 120 | 136 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEHVHCTSYS YSYCYPAEAP AATASLPFDT ADGDEMYMQL NALLLQMEAD DESSDSFSSS 60 SPASSSEAGT ASATTSDEQP WRESSSTAEE RWRPEAFIGV RKRPWGKFAA EIRDSTRRGA 120 RVWLGTFDTP EAAALAYDHA AYAARGAAAV LNFPVERVRE SLGALALSVS AGNSPVLALK 180 RRHSKRTRRS KLSAASSSLK TQRQPTTTLH FSGVSVMDVV VPQRHEASPC SYGTVELEDL 240 GADSLEELLR VSSELQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-23 | 97 | 156 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727683 | 2e-90 | KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828658.1 | 0.0 | ethylene-responsive transcription factor ERF094-like | ||||
TrEMBL | A0A2S3IDX2 | 0.0 | A0A2S3IDX2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Hb01145.1.p | 7e-78 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP277 | 37 | 249 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 7e-23 | ethylene-responsive element binding factor 15 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.H02089.1 |