PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.H01845.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 202aa MW: 21358.4 Da PI: 8.0786

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.H01845.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.9	1.8e-13	7	58	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +e ErrRR++i+ ++L +l+Pk ++ + +K ++ ++iL Av YIk+L Pahal.H01845.1 7 RKETERRRRQQIKGLCARLASLIPKqHCHSSLGKmNNQSDILDAAVSYIKEL 58 5799*******************8888888888*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.941	2	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.06E-8	5	63	No hit	No description
SuperFamily	SSF47459	5.1E-12	7	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-12	7	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-8	8	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-10	8	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MAAAVQRKET ERRRRQQIKG LCARLASLIP KQHCHSSLGK MNNQSDILDA AVSYIKELKE 60 MVEQLEQRRR SFPAQPMDAT GGGGAGAAST SAVAASRGVG SEEEASNEEM AAAAAAPVVL 120 ARLQPPDGSS LDVTLVTGAQ QPLLMLPEVI AVLEEEGAEV LNATLSVVAG RRIFCSVHSR 180 AFSSRIGIDV SRVTERLKAL L*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828761.1	1e-143	protein IRON-RELATED TRANSCRIPTION FACTOR 2-like
TrEMBL	A0A3L6P9K1	3e-79	A0A3L6P9K1_PANMI; Uncharacterized protein
STRING	Pavir.Ea00786.1.p	2e-47	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	1e-09	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.H01845.1