PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01278.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 623aa    MW: 70365.9 Da    PI: 9.5212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01278.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07409450347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE e+  + v++ G+  Wk  a  +g  +++ ++k+ w+  
   Pahal.H01278.1 409 KWTQEEYEIVRRFVEKNGTT-WKELATDLG--KSEIHVKDTWRRM 450
                      8*****************99.********8..9*******99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.6E-4333404IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-6335397IPR009057Homeodomain-like
PROSITE profilePS500905.413336402IPR017877Myb-like domain
SuperFamilySSF466892.41E-8382463IPR009057Homeodomain-like
PROSITE profilePS512949.59404455IPR017930Myb domain
SMARTSM007170.05406453IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-9409461IPR009057Homeodomain-like
PfamPF139212.2E-9410468No hitNo description
PROSITE profilePS500908.258452520IPR017877Myb-like domain
SMARTSM007170.0022456522IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-8462505IPR009057Homeodomain-like
SuperFamilySSF466894.21E-8500578IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-6506573IPR009057Homeodomain-like
PROSITE profilePS500907.979522575IPR017877Myb-like domain
SMARTSM0071715526577IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MSGLIGGGAA GGVRDWERRR GAARTSAAAR RLRRRAATRW QGGGPDAISA SIGMERGSAA  60
EYSEVKAVIG SNEEKKGQRS KKDKGQRKRK KDKAKGHGGD GDRSIESDDK NHSVEMEHAE  120
VSAKMAEKPC SEHAEVIMSK RDAKKDRKKK KRNKEVDTIS QKQIPDANDG SVGSEYVEMN  180
KGEGEHDSTS KKGKRKHRDG ETSSNGSCDQ IVSGGDKKRK WKEPSVTLEE GNDVDVSKMG  240
QNTEGKKKRR KERDNIAVDL SQNTPAGDGK NCNEEKKTSK DDNDGGKSRK VNMARRKDKG  300
KRVSFTDDVE VFNIDGDGAD EEGDGSGDSG LVHGKRFTPE EDAKLMEAIE KYAQMKQLGE  360
KGLEMIRASM KHPELRGCWA EIATSLPHRP QMAVYKRARI LLYRSAERKW TQEEYEIVRR  420
FVEKNGTTWK ELATDLGKSE IHVKDTWRRM KPKNLKKGSW TQDEYQNLFD LVNLDLRVKA  480
HQKIAPSHRQ LRDNISWEAI SEKLTTRSNK DCCLKWYQQL ASPLVKEGIW ADTDDYLLME  540
ALQKVDAVCV EDVDWERLLD HRSGELCRQR WNQMVRMIGG HREKPFIEQV EVLARRYCQE  600
MLDYRKAESA DLSPDELTGG TD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18288DKGQRKR
28690RKRKK
38691RKRKKD
48692RKRKKDK
5143151KKDRKKKKR
6146151RKKKKR
7245249KKKRR
8245250KKKRRK
9246250KKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811598.10.0RNA polymerase I termination factor-like isoform X1
TrEMBLA0A2S3HM590.0A0A2S3HM59_9POAL; Uncharacterized protein
STRINGPavir.Db02194.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54052635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-92MYB_related family protein