PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00979.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 441aa    MW: 46228.2 Da    PI: 7.9245
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00979.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17353385133
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                     Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Pahal.H00979.1 353 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 385
                     ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-16347401IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.596347385IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.28E-14349410No hitNo description
Gene3DG3DSA:3.30.50.104.2E-14351387IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.18E-14352408No hitNo description
PfamPF003201.8E-15353386IPR000679Zinc finger, GATA-type
PROSITE patternPS003440353378IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MRKKSHLSLL DVPEDLPDCD GGCFRPGGGL CCPDDPLDLV LQLFSTPSPQ EASLEALGIR  60
GSPRRQEQPP PLGWDQENGF GGVRLLGGGG CGEPESSRVP EDTEPIDVDM YLVNVAPDGG  120
GEATVRNPSR DAGGIPAAVP AGGVRACGAL GGGVSNAAPP LLPPLSAGAL HPYTFRAFDG  180
VVSSGAPPLP APMPAGGGPH SCGALAGVVS DVAPPVPAGA LHACRALFVG AVSNDAPPSW  240
AHAPQSAWAL PASRTSSGCL TPTTSETSSP APVWQPLAWV VPRKRRRPPV MCRKRPWSLE  300
FPLHALPAAP PENPGDNNGD EDAKNSCDNA GGGGIRRRRP VPRQRNRQAQ RVCSHCHSPD  360
TPQWRAGPDG PGTLCNACGI RYAANKLLPE YRPSTAPSFR SDQHSNRHRK VVKLREQKVK  420
ETPKAMPDPV PPPPKSNEFM D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1281287PRKRRRP
2282286RKRRR
3336343RRRPVPRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432160.0AC243216.1 Panicum virgatum clone PV_ABa003-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T8I7T00.0A0A2T8I7T0_9POAL; Uncharacterized protein
STRINGPavir.Ha01602.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.19e-26GATA transcription factor 4