PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00784.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 283aa    MW: 31015.3 Da    PI: 12.2752
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00784.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.76.8e-10190252163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+ +kke ++  +e+ +lk  +
  Pahal.H00784.1 190 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSQNENMKKEKDMVMQEYLSLKEAN 252
                     89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.4E-5187255No hitNo description
SMARTSM003381.3E-11190254IPR004827Basic-leucine zipper domain
PfamPF001707.1E-8190253IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.048192255IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.84E-7194250No hitNo description
CDDcd147027.67E-12195245No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MRPSITGDVN SFATGPYARA PPAPAPGLAS RSPLVRVHVH GGRPLTQRRH QPATDLGSQP  60
PGATRDCPPP PARARDQAPP APRGGRGRGG AGEHAAEPRA GQGRHPVRVP LLLQQLQRRP  120
PAPRAPPPTS PTARRARAGR RGDGVRPPAP PHAHRGNRTL ARHPVYHDLS FNSTSAGRLI  180
DPPRVLPQAE KEAKRLRRVL ANRESARQTI LRRQAIRDEL ARKVADLSSQ NENMKKEKDM  240
VMQEYLSLKE ANKQLKEQAR HHHRHHHHPS LSLSLSFSPL PL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9585028e-96EU958502.1 Zea mays clone 1697405 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J28001.1.p7e-41(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31653475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.19e-17bZIP family protein