PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00752.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 667aa    MW: 69356.8 Da    PI: 6.4392
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00752.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093623991954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Pahal.H00752.2 362 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 399
                     664459******************************88 PP
2BELL116.31.5e-37223294172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erqelq+kk+kL+++l+eV++rY+qy+ q+q+v ssFea+ag gsa++Yt+lAl++iSr+FrcL+daia q+
  Pahal.H00752.2 223 ERQELQMKKSKLINMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARMYTALALRTISRQFRCLRDAIAAQV 294
                     79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.0E-61148292IPR006563POX domain
PfamPF075261.5E-48153291IPR006563POX domain
PROSITE profilePS5007111.969340403IPR001356Homeobox domain
CDDcd000863.62E-13343404No hitNo description
SMARTSM003891.2E-9343407IPR001356Homeobox domain
SuperFamilySSF466893.64E-17345410IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-29346409IPR009057Homeodomain-like
PfamPF059202.6E-18360399IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQASADGL QTLYLMNPGY ASYGDAGASP PGATNMMLLN SAVSTMTPAS  60
FGHHQQSPSA AQQHFVGIPL QAPPSGYNLW TPATSGAADM SPPQAQTPGA AAGVSAVLSL  120
SSREAPPVTV AAVGGADEGK YQLGATATPQ GQMVMSSKYL KAAQELLDEV VSVSKGVEDA  180
KAATKSLAAV KKKEDSEGVS CGDTDDGGGA KSGGAVPELS TAERQELQMK KSKLINMLDE  240
VEQRYRQYHG QMQAVSSSFE AAAGAGSARM YTALALRTIS RQFRCLRDAI AAQVRAASRA  300
LGEDADAAVA GGRTVGSRLR YIDHQLRQQR ALQQLGMMQG GAWRPQRGLP ERSVSILRAW  360
LFEHFLHPYP KDSDKIMLAK QTGLTRSQVS NWFINARVRL WKPMVEEMYL EETRDQDGGG  420
GGNDEGKSGG GSKSGDTNNG VDGVTQRADG GGSGAMSKAA ARVAGGAAEG APSAKGVGGV  480
HGSTLLELAR DQQTAHAGFY EGEDDDDDDV ERRLKKARGD EPAPGPFHSH HVHDMAALHT  540
QAAAAARQQH EEVSHRELLM KFMESGGAGA GARDHHHQDG GGYSLFAPGP YGQFGSEPFA  600
FAGNSGVSLT LGLPHGAGGS AEQTASFLMG SSTAGDSGSH GGAGGYDMNM QSTKSFAAQL  660
MRDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17349407563Homeobox protein Meis2
4xrm_B3e-17349407563Homeobox protein Meis2
5bng_A2e-17349407159Homeobox protein Meis2
5bng_B2e-17349407159Homeobox protein Meis2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-108BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A2S3ICH10.0A0A2S3ICH1_9POAL; Uncharacterized protein
STRINGPavir.Ha01822.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-73BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]