PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00348.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 257aa    MW: 28507.1 Da    PI: 6.3598
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00348.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-111822221055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Pahal.H00348.2 182 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 222
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.7E-14172235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-15172237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-12181226No hitNo description
PfamPF000105.1E-9182222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEAKCASIWS EESEMIAHLQ SMFWNSSDAH ASLSSPNSST SSCIEPSTLP TALFLPLIEK  60
ESYDTVPFEN AAADWCFDHQ SEAFAIGNAV TGDKRALLMD ERRKKSKNSS KKPRTVAPVL  120
MTTSSALDDK ANTELINHSS SWCCSSEDDS IGVCEESVVL KQSSSSRGRS WSSKNSQSLY  180
AKKRRERINE KLKTLQQLIP NGTKVDMSTM LEEAVQYVKF LQLQIKLLSS DETWMYAPLA  240
YNHTSIDINL NSSAKK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826894.10.0transcription factor bHLH139-like isoform X1
TrEMBLA0A2S3IFD10.0A0A2S3IFD1_9POAL; Uncharacterized protein
STRINGPavir.Ha00126.1.p1e-147(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.15e-35bHLH family protein