PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H00348.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 265aa    MW: 29576.5 Da    PI: 9.0951
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H00348.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-111902301055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++RR+riN+++ +L++l+P+      +K++ +++Le+Av+Y+k Lq
  Pahal.H00348.1 190 KKRRERINEKLKTLQQLIPNG-----TKVDMSTMLEEAVQYVKFLQ 230
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002538.3E-15754IPR001209Ribosomal protein S14
SuperFamilySSF474599.68E-15180245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-14180243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.472180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.03E-13189234No hitNo description
PfamPF000105.4E-9190230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGHSNVWNSH PKNYGPGSRV CRVCANPHGL IRKYGLMCCR QCFRSNAKDI GFIKGQYPTE  60
GQLDSFFVGK AEGIDELGQF ADWCFDHQSE AFAIGNAVTG DKRALLMDER RKKSKNSSKK  120
PRTVAPVLMT TSSALDDKAN TELINHSSSW CCSSEDDSIG VCEESVVLKQ SSSSRGRSWS  180
SKNSQSLYAK KRRERINEKL KTLQQLIPNG TKVDMSTMLE EAVQYVKFLQ LQIKLLSSDE  240
TWMYAPLAYN HTSIDINLNS SAKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Bd9e-3215415440S ribosomal protein S14
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4579362e-65AF457936.1 Zea mays clone cho1c.pk002.j14, mRNA sequence.
GenBankDQ2451412e-65DQ245141.1 Zea mays clone 13268 mRNA sequence.
GenBankEU9545492e-65EU954549.1 Zea mays clone 1470027 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9579162e-65EU957916.1 Zea mays clone 1633015 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9624582e-65EU962458.1 Zea mays clone 242876 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9655552e-65EU965555.1 Zea mays clone 286898 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9697352e-65EU969735.1 Zea mays clone 334813 40S ribosomal protein S29 mRNA, complete cds.
GenBankEU9753292e-65EU975329.1 Zea mays clone 487665 40S ribosomal protein S29 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826894.11e-131transcription factor bHLH139-like isoform X1
TrEMBLA0A2S3IFD11e-129A0A2S3IFD1_9POAL; Uncharacterized protein
STRINGPavir.Ha00126.1.p1e-103(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-34bHLH family protein