PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02816.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | B3 | ||||||||
Protein Properties | Length: 429aa MW: 47014.6 Da PI: 6.9261 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45 | 1.9e-14 | 296 | 391 | 3 | 95 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 k lt+sdv++ gr+vlpkk ae + + + + l + d e +W++k++y ++ks++y+l+ + eFvk + L+++D++v++ ++ ++ Pahal.G02816.2 296 KDLTNSDVGNIGRIVLPKKDAEPNlpilED--KDGLILEMDDfELPAVWKFKYRYwpNNKSRMYILE-TTGEFVKRHSLQAKDILVIY--KNkKS 385 789******************999886432..34556777775555*********888888888888.9*******************..44477 PP E..EEE CS B3 90 felvvk 95 +++v + Pahal.G02816.2 386 GRYVAR 391 777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.88E-16 | 292 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.7E-24 | 292 | 403 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.7E-8 | 294 | 396 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-11 | 296 | 391 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.43E-17 | 298 | 389 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MANAKGSSAG AAGAGHGDLG RAISHEQYQA FVASVHRTAP GAANVHQYPA GLIPEPPMAM 60 PVHVPVPRPS YSPQIAAPPP QPFARPPEPH RAQSQPPTGR YQDYSPYGNT ASSQYTRGFA 120 DWGTHNNALM SLAHATTFGS GSSSINSNGF HQNFSSYNTH TWTTTYMPRN PYNTAYGPAT 180 MNMMLQTPSF HNNHEKDSGF AASSFTMPAT VVPTSPFQLM SPKSTNYTST QIFEEPNNLE 240 DTSTVYGSGD IESDHSEEPD PTPVAEMEDL KQGNGHIINA MSKTINCQDY RIILRKDLTN 300 SDVGNIGRIV LPKKDAEPNL PILEDKDGLI LEMDDFELPA VWKFKYRYWP NNKSRMYILE 360 TTGEFVKRHS LQAKDILVIY KNKKSGRYVA RAVKAEDIQV PQCECIKAGN LSEECGFAVS 420 PSGKKIII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9c_A | 2e-33 | 284 | 390 | 3 | 109 | B3 domain-containing transcription factor LEC2 |
6j9c_D | 2e-33 | 284 | 390 | 3 | 109 | B3 domain-containing transcription factor LEC2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825471.1 | 0.0 | putative B3 domain-containing protein Os04g0676650 | ||||
TrEMBL | A0A2T7D1R4 | 0.0 | A0A2T7D1R4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00057.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 3e-35 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02816.2 |