PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02594.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family AP2
Protein Properties Length: 585aa    MW: 62652.6 Da    PI: 7.0113
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02594.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.5e-15243302155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Pahal.G02594.1 243 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 302
                     57*******************666664477446*************************98 PP
2AP247.83.6e-15345396155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Pahal.G02594.1 345 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 396
                     57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-12243302IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-17243311IPR016177DNA-binding domain
CDDcd000188.12E-22243312No hitNo description
Gene3DG3DSA:3.30.730.106.5E-16244311IPR001471AP2/ERF domain
SMARTSM003802.8E-29244316IPR001471AP2/ERF domain
PROSITE profilePS5103219.322244310IPR001471AP2/ERF domain
PRINTSPR003673.5E-6245256IPR001471AP2/ERF domain
PfamPF008477.8E-10345396IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18345406IPR016177DNA-binding domain
CDDcd000189.74E-25345406No hitNo description
Gene3DG3DSA:3.30.730.104.4E-18346404IPR001471AP2/ERF domain
SMARTSM003802.1E-33346410IPR001471AP2/ERF domain
PROSITE profilePS5103219.348346404IPR001471AP2/ERF domain
PRINTSPR003673.5E-6386406IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MAPRNPHINI PSPRCPCALT SLSQHPPLSP SVCERERLAL VCGAAVSSPS SILSPSASPF  60
FTSREIPSPS SASTARFLTF PPRSIGKINS SRDPGVTVVD SSRSDRGPGV MDTSQHYPWL  120
NFSLAHHCDL EEEERGAAAE LAAIAGAAPP PKLEDFLGGG INGGGAGAGG PVSVAETAAA  180
EMYDSDLKFI AAAGFLQSGA VGAAAPSPVS SLEQADPKLA LPAAAAPVPE QRKAVDSFGQ  240
RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QSRKGRQVYL GGYDKEEKAA RAYDLAALKY  300
WGPSTTTNFP VAEYEKELEE MKNMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ  360
ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA AIKFRGLNAV TNFEISRYNV ESIISSNLPI  420
GSMSASSGRS AKALESTPSN SSDAMPVEAS TAPLFAALPV KYDQQDYLSM LALQHHQQGN  480
LQGLGFGLYS SGVNLDFANS HGTTSSMANC YTNGTASHEQ HQHHQQLQDQ QQNQTHQNSS  540
SCSSLPFATP IAFSGSYESS MTPGPFGYSY PNVAAFQTPI YGME*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118910.0AK111891.1 Oryza sativa Japonica Group cDNA clone:J033072A06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822847.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-136AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2S3IB390.0A0A2S3IB39_9POAL; Uncharacterized protein
STRINGPavir.Ga00050.1.p0.0(Panicum virgatum)
STRINGPavir.Gb00275.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-126AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]