PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02338.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 191aa    MW: 19842.7 Da    PI: 8.7525
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02338.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19454155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++++GVr ++ +gr++AeIrdp     r +r++lg+f+tae Aa+a++aa++ ++g
  Pahal.G02338.1  4 PRFRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTAEAAARAYDAAALHFRG 54
                    689*******.**********8...2.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.5E-13454IPR001471AP2/ERF domain
CDDcd000185.37E-20464No hitNo description
Gene3DG3DSA:3.30.730.104.9E-32563IPR001471AP2/ERF domain
SMARTSM003803.6E-37568IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-22564IPR016177DNA-binding domain
PROSITE profilePS5103224.54562IPR001471AP2/ERF domain
PRINTSPR003671.2E-10617IPR001471AP2/ERF domain
PRINTSPR003671.2E-102844IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MMEPRFRGVR KRPWGRYAAE IRDPARKARV WLGTFDTAEA AARAYDAAAL HFRGPKAKTN  60
FPVSFAAGAH PLPPPPKMLA VSPSSSTVES SSRDSPAASP ALPAPSLDLS LGMPPMVAAQ  120
PFLFLDPRLA VTVAVPAPVP CRPAVVAGAS KATCREDEQS DTGSSSSVVD ASPAVDVGFD  180
LNMPPPAEVA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-215691479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823499.11e-131ethylene-responsive transcription factor 4-like
TrEMBLA0A2T8IDR91e-129A0A2T8IDR9_9POAL; Uncharacterized protein
STRINGPavir.Ga00485.1.p7e-94(Panicum virgatum)
STRINGPavir.Gb00545.1.p3e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118532537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.12e-22ethylene response factor 7