PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G02137.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 318aa    MW: 34213.8 Da    PI: 6.4316
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G02137.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161564148
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv+ ++++Gg+  +W+  ++  g++R++k+c++rw +yl
   Pahal.G02137.1 15 KGPWTEEEDRALVEHIQRHGGHvgSWRNLPKAAGLNRCGKSCRLRWTNYL 64
                     79**********************************************97 PP
2Myb_DNA-binding55.41.4e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
   Pahal.G02137.1  70 RGNFTADEERLIIALHAELGNK-WSTIATHLD-GRTDNEIKNYWNTH 114
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-23767IPR009057Homeodomain-like
PROSITE profilePS5129417.2651064IPR017930Myb domain
SuperFamilySSF466895.03E-2912111IPR009057Homeodomain-like
SMARTSM007176.7E-121466IPR001005SANT/Myb domain
PfamPF002491.8E-141564IPR001005SANT/Myb domain
CDDcd001672.99E-101764No hitNo description
PROSITE profilePS5129427.28665119IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2668119IPR009057Homeodomain-like
SMARTSM007176.0E-1669117IPR001005SANT/Myb domain
PfamPF002492.8E-1570114IPR001005SANT/Myb domain
CDDcd001672.91E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI QRHGGHVGSW RNLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFTADEERL IIALHAELGN KWSTIATHLD GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ RLPPDDVLGG ALAAAPGLPE ALLSAAASLG GLNSVLMQAQ ALQLLLQAVN  180
GGAASAGLMA SFSPAVDNAM PPLLNASSIV PNFQDQQMNL LAHAANYRPA DDYLSNLASF  240
AEQDVVRQPN ASAPAPAAAL VPASPFPQEV AAAADRRPVQ GFSDLLSEAI DQVPSMCSLE  300
DEHFWKDLLA ESNHLPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-27151194105C-Myb DNA-Binding Domain
1msf_C2e-27151194105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794320.0HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825704.10.0transcription factor MYB41-like
SwissprotQ9S9Z24e-67MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2S3I9U90.0A0A2S3I9U9_9POAL; Uncharacterized protein
STRINGPavir.Gb00812.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02940.17e-71myb domain protein 107
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]