PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G02045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 28582.4 Da PI: 8.6907 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+i+fss+gklye+ Pahal.G02045.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 103.5 | 2.7e-34 | 86 | 172 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +s++qe+++Lk+++e+Lqr+qRh+lGedL++Ls+keLqqLe+qLe +l++ R++K+++++eq++el++ke++l e nk+L++kle Pahal.G02045.1 86 EPQSWYQEMSRLKAKLESLQRSQRHMLGEDLGPLSIKELQQLEKQLEYALSQARQRKTQMMMEQVDELRRKERQLGELNKQLKNKLE 172 679**********************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.529 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.47E-46 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 4.58E-33 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.6E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 17.619 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.4E-31 | 87 | 171 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIVFSS RGKLYEFGSA 60 GVNKTLEKYH NCCYNAQGSN NDFGGEPQSW YQEMSRLKAK LESLQRSQRH MLGEDLGPLS 120 IKELQQLEKQ LEYALSQARQ RKTQMMMEQV DELRRKERQL GELNKQLKNK LEAEGCSNYR 180 AVVQTSWAPD AAVGSDGGAL PAPNAQPPVA AMDCEPTLQI GYHQFVAPDQ AAAMPRSSTT 240 EGGEQNGHFM LGWAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 3e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 3e-22 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 3e-22 | 1 | 69 | 1 | 69 | MEF2C |
6byy_A | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 3e-22 | 1 | 69 | 1 | 69 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824169.1 | 0.0 | MADS-box transcription factor 17-like | ||||
Swissprot | Q7XUN2 | 1e-132 | MAD17_ORYSJ; MADS-box transcription factor 17 | ||||
TrEMBL | A0A2S3I9M9 | 0.0 | A0A2S3I9M9_9POAL; Uncharacterized protein | ||||
STRING | Si010898m | 1e-173 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4187 | 35 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-94 | AGAMOUS-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G02045.1 |
Publications ? help Back to Top | |||
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