PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01854.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 306aa    MW: 31929.5 Da    PI: 7.4251
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01854.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05526223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C+ C+++F ++  L  H+r H
  Pahal.G01854.1  5 TCKLCSRRFASPRALAGHMRAH 26
                    6*******************99 PP
2zf-C2H212.60.00042236258123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Pahal.G01854.1 236 HECPYCFRVFPSGQALGGHKRSH 258
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.02426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66427IPR007087Zinc finger, C2H2
PfamPF138941.7E-4526No hitNo description
SuperFamilySSF576674.44E-7526No hitNo description
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576674.44E-7167191No hitNo description
PfamPF139121.2E-10171196IPR007087Zinc finger, C2H2
SMARTSM0035541172192IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.99E-5233259No hitNo description
PfamPF139121.0E-11236258IPR007087Zinc finger, C2H2
SMARTSM003550.13236258IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.871236258IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAKNTCKLCS RRFASPRALA GHMRAHSIAA AKSQISSASS ASTSLAVGGG GGFDDDTDAK  60
KPGPIQGHVL REKPKRRARL AASDFSDRES ETTDYYSPDA KRSPGGSGDA EPVSSVSDGD  120
TPVEDVALSL MMLSRDSWPA PPPPAYYSAY RADSDDEGGA RPAAAAQKRT RYECPACKKV  180
FRSYQALGGH RASNVRGGRG GCCAPPLSTP PPPAPLQPLL ECDDGGEEDP SKAQPHECPY  240
CFRVFPSGQA LGGHKRSHLC SAAAADPSIA MKSLGFIDLN LPAPFDDVEH SAVSDPFLSS  300
KPAGS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9698781e-155EU969878.1 Zea mays clone 336750 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825815.10.0zinc finger protein ZAT1-like
TrEMBLA0A2S3I9580.0A0A2S3I958_9POAL; Uncharacterized protein
STRINGSi010615m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35183377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.17e-28C2H2-like zinc finger protein