PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26277.2 Da PI: 4.462 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 9.6e-18 | 58 | 107 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++aa+ +++g Pahal.G01832.1 58 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFENPEMAARAHDAAAVAIKG 107 69****998.**********843...6**********************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.2E-11 | 58 | 106 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-35 | 58 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 58 | 116 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.273 | 58 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-21 | 58 | 116 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.7E-10 | 59 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.50E-20 | 59 | 117 | No hit | No description |
PRINTS | PR00367 | 8.7E-10 | 81 | 97 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MEHEQVLPQV SSEACTCSDN SSSITSVNAA SPSSSDDSGS AGGNKGTKRP RRDLKHPTYR 60 GVRMRTWGKW VSEIREPRKK SRIWLGTFEN PEMAARAHDA AAVAIKGRAA HLNFPELAHE 120 LPRAASAAPK DVQAAAALAA ATLVAAASPV VPSYNNADAA DADTAADQAV EQYDYEQAAA 180 PDFGIENAAP SCGGMGLDLA FLDVPDAPLD FGYMLSPLPL PPSYCGSPWD DIADELCFEE 240 PLLLWEH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 55 | 115 | 11 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727864 | 1e-119 | KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825378.1 | 0.0 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q9LYD3 | 2e-44 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A2S3I923 | 1e-180 | A0A2S3I923_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7CYA4 | 1e-180 | A0A2T7CYA4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01129.1.p | 1e-123 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 2e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01832.1 |
Publications ? help Back to Top | |||
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