PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G01766.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | Trihelix | ||||||||
Protein Properties | Length: 656aa MW: 70793.1 Da PI: 9.514 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 97.8 | 9.6e-31 | 88 | 172 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++fd+lea Pahal.G01766.2 88 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 172 8*********************************************************************866665..******985 PP | |||||||
2 | trihelix | 108.7 | 3.8e-34 | 480 | 565 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r e++ r++++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea Pahal.G01766.2 480 RWPKTEVHALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 565 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.538 | 81 | 145 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.9E-4 | 85 | 147 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-4 | 86 | 145 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 4.41E-28 | 87 | 152 | No hit | No description |
Pfam | PF13837 | 5.0E-22 | 87 | 173 | No hit | No description |
SMART | SM00717 | 3.4E-4 | 477 | 539 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.1E-23 | 479 | 566 | No hit | No description |
PROSITE profile | PS50090 | 7.515 | 479 | 537 | IPR017877 | Myb-like domain |
CDD | cd12203 | 3.55E-29 | 480 | 544 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 656 aa Download sequence Send to blast |
MQQQHQHQDG GGSQYGAVPP DMGPFSPPPA SGPMPLSSRP PPATQPQQPR ASYEELAAVS 60 SGAGAGGFDD EMLGGGGGGG SSGASSNRWP REETQALIRI RSEMDATFRD ATLKGPLWED 120 VSRKLADLGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFDEL EALHAAAPQP 180 QQQPPHHQLP PASTAPPLHA FAAPVSAPQP MSSMPPPPPG PMQPAPISSA APAPAPGPVP 240 VEMPSAAHQP LNLPGFSFSS MSESESDDES EDDDMTAETG GSRDRLGKRK RGGGGGSKKM 300 MSFFEGLMQQ VVERQEEMQR RFLETMEKRE AERTAREEAW RRQEVARLNR EQEQLAQERA 360 AAASRDAAII AFLQRIGGQS VQPPPAVVVP MSVQTPQPPK QPPRQQHPPP PSPQATTPQS 420 KPISAAPLQQ QPKETPHREV ATPRSAPPTS SASLELVPVT EQHVDSGLGG GDGGAASSSR 480 WPKTEVHALI QLRMELDMRY QETGPKGPLW EEISSGMRRL GYNRSSKRCK EKWENINKYY 540 KKVKESNKKR PEDSKTCPYF HQLEAIYNRK HLRSVAAAAA SNVVIAPAAP PALPEQPNPS 600 RHEIEGKNIN DDKRNNGGSG GGAPQVPASN GEKAPTTPAA FDADSGMKKK TSSGS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | KRSAKKCKE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825675.1 | 0.0 | trihelix transcription factor GTL1-like isoform X2 | ||||
TrEMBL | A0A2S3I8U2 | 0.0 | A0A2S3I8U2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01188.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33240.1 | 1e-39 | GT-2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G01766.2 |