PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01766.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 738aa    MW: 79617.5 Da    PI: 6.6294
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01766.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.51.1e-3088172187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+++e++aLi++r+em+ ++r++ lk+plWe+vs+k+++ g++rs+k+Ckek+en++k+yk++keg+ +r++++s  +++fd+lea
  Pahal.G01766.1  88 RWPREETQALIRIRSEMDATFRDATLKGPLWEDVSRKLADLGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFDELEA 172
                     8*********************************************************************866665..******985 PP
2trihelix108.44.5e-34480565187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev+aLi++r e++ r++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk+ykk+ke++kkr +e+s+tcpyf+qlea
  Pahal.G01766.1 480 RWPKTEVHALIQLRMELDMRYQETGPKGPLWEEISSGMRRLGYNRSSKRCKEKWENINKYYKKVKESNKKR-PEDSKTCPYFHQLEA 565
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.53881145IPR017877Myb-like domain
SMARTSM007171.9E-485147IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-486145IPR009057Homeodomain-like
CDDcd122032.66E-2887152No hitNo description
PfamPF138376.0E-2287173No hitNo description
SMARTSM007173.4E-4477539IPR001005SANT/Myb domain
PROSITE profilePS500907.515479537IPR017877Myb-like domain
PfamPF138371.3E-23479566No hitNo description
CDDcd122032.11E-29480544No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MQQQHQHQDG GGSQYGAVPP DMGPFSPPPA SGPMPLSSRP PPATQPQQPR ASYEELAAVS  60
SGAGAGGFDD EMLGGGGGGG SSGASSNRWP REETQALIRI RSEMDATFRD ATLKGPLWED  120
VSRKLADLGY KRSAKKCKEK FENVHKYYKR TKEGRAGRQD GKSYRFFDEL EALHAAAPQP  180
QQQPPHHQLP PASTAPPLHA FAAPVSAPQP MSSMPPPPPG PMQPAPISSA APAPAPGPVP  240
VEMPSAAHQP LNLPGFSFSS MSESESDDES EDDDMTAETG GSRDRLGKRK RGGGGGSKKM  300
MSFFEGLMQQ VVERQEEMQR RFLETMEKRE AERTAREEAW RRQEVARLNR EQEQLAQERA  360
AAASRDAAII AFLQRIGGQS VQPPPAVVVP MSVQTPQPPK QPPRQQHPPP PSPQATTPQS  420
KPISAAPLQQ QPKETPHREV ATPRSAPPTS SASLELVPVT EQHVDSGLGG GDGGAASSSR  480
WPKTEVHALI QLRMELDMRY QETGPKGPLW EEISSGMRRL GYNRSSKRCK EKWENINKYY  540
KKVKESNKKR PEDSKTCPYF HQLEAIYNRK HLRSVAAAAA SNVVIAPAAP PALPEQPNPS  600
RHEIEGKNIN DDKRNNGGSG GGAPQVPASN GEKAPTTPAA FDADSGMKKP EDIVRELNEH  660
PPRELTTDET DSDEMGDEYT DDGEEGEDDG KLQYRIQFQR PTNPGGTNSA PAPASTAAAA  720
PAVPTSAPAS TFLAMVQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138KRSAKKCKE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0550330.0BT055033.1 Zea mays full-length cDNA clone ZM_BFc0059A16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825673.10.0trihelix transcription factor GTL1-like isoform X1
RefseqXP_025825674.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2S3I8X90.0A0A2S3I8X9_9POAL; Uncharacterized protein
STRINGPavir.Gb01188.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-39GT-2-like 1