PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G01210.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 310aa    MW: 33903.4 Da    PI: 9.8149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G01210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.95e-101622441198
                     HHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  11 lksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++   + +p kf++++   +     +++ ++  + g+++++kl  + + +++++++GW++F + +++ e  +++++++g++ f  +vkvf+
  Pahal.G01210.1 162 ME--KMLIPAKFVQQYiakE--LLDNRMAIILGPIGKVYNIKL--EVGHSGVFFAGGWSQFLRVHDITEANSLLLRYEGNMVF--TVKVFE 244
                     33..3799999999998542..33566889999**********..999999********************************..999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-13146247IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-16149247IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.292150246IPR003340B3 DNA binding domain
CDDcd100177.08E-11151243No hitNo description
SMARTSM010193.9E-6153246IPR003340B3 DNA binding domain
PfamPF023629.5E-8162244IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MASPGYRGAA KAKHLRVLLP FTCDALVSAT DAVALECRRA RAEACTSFTD RLILLPYPQR  60
IPDEVAVEIG AEEALIVGPA SGKVIWPVEV GQDGDGAFLG LRGLLVLRHR GRGVLSAKAF  120
DATFCLRELG GAPAPPAVEA TASSKDSIHK PKFIRVLPRD FMEKMLIPAK FVQQYIAKEL  180
LDNRMAIILG PIGKVYNIKL EVGHSGVFFA GGWSQFLRVH DITEANSLLL RYEGNMVFTV  240
KVFEPDGYQR EAKHKKNRVL QISTLPHIQE QKETPSASVQ KQLKNNLPTV IGEKKPQDSK  300
TSLDLASLK*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684232.11e-115putative B3 domain-containing protein Os04g0347400
TrEMBLA0A3L6Q5T31e-168A0A3L6Q5T3_PANMI; Putative B3 domain-containing protein
STRINGPavir.J00272.1.p1e-110(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.12e-09B3 family protein