PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00961.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 656aa    MW: 73598.5 Da    PI: 8.5712
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00961.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07597640243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      ++WT+   + lv+a k ++++   +W+++a+ ++ g+t  qck +
   Pahal.G00961.1 597 DAWTETQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 640
                      58********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.83E-2079175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.6E-2193199IPR001623DnaJ domain
SMARTSM002713.4E-1596171IPR001623DnaJ domain
CDDcd062572.67E-1297168IPR001623DnaJ domain
PfamPF002264.0E-1897176IPR001623DnaJ domain
PROSITE profilePS5007618.59297179IPR001623DnaJ domain
PRINTSPR006253.0E-8102120IPR001623DnaJ domain
PRINTSPR006253.0E-8120135IPR001623DnaJ domain
PRINTSPR006253.0E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.202464519IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-5466511IPR009057Homeodomain-like
SuperFamilySSF466891.72E-7466512IPR009057Homeodomain-like
SMARTSM007179.5E-6468521IPR001005SANT/Myb domain
PfamPF002491.1E-5471511IPR001005SANT/Myb domain
CDDcd001671.17E-4471511No hitNo description
SMARTSM007172.0E-5595647IPR001005SANT/Myb domain
SuperFamilySSF466895.01E-8597650IPR009057Homeodomain-like
PfamPF002495.6E-6598640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-4598640IPR009057Homeodomain-like
CDDcd001674.99E-5598640No hitNo description
PROSITE profilePS500906.191599640IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MEPKKSCLLI TYSQEIIDGA PLYVSSNCLP IKALKYEPAG HSFHAAAMKL LGLAEQEDTE  60
TDDRSVSSDD KSQDFNTASD TFSSKGKKKS SGSQQQDHYA LLGLGHLRFL ATEDQIRKSY  120
RDMALKHHPD KQAALILAET TEEAKQAKKD EIESHFKSIQ EAYEVLIDPT KRRIYDSTDE  180
FDDDVPTDCA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD ATPIEEVDKF YNFWWYNFKS  240
WREFPDDDEY DLEQAESREH KRWMERQNAK LQEKAKKVEY ARVRTLVDNA YKKDPRIQRR  300
KDEEKAEKQR RKEAKYLAKK QQEEEAARAA EEERKRKEEE AKKAAEAALN QKKQKEKEKK  360
LLRKEKTRLR TLAAPVVAES HFGLSDEDVE TACASLDMEQ LKKLNDSVEG KDAAEKARLL  420
SSALHKESSS KEAKKSDANG VESSASKSNS TGGKATQGSS ILNSYEKKER PWGKEEVEML  480
RKAIQKYPKG TSRRWEVVSE FIGTGRSVEE ILKATKTVLL QKPDSTKAFD SFLEKRKPAQ  540
SIASPLSTRD ETVGSSTEGA GTASSKVAAQ PASSQTANGK AAADPVPDIA PSMTDPDAWT  600
ETQVLALVQA LKAFPKDASQ RWERVAAAVP GKTVVQCKKK VAAMRENFRS KKSGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1719329820124Zuotin
5dje_B3e-1719329820124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1333354RKRKEEEAKKAAEAALNQKKQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823394.10.0dnaJ homolog subfamily C member 2
TrEMBLA0A2S3I5U00.0A0A2S3I5U0_9POAL; Uncharacterized protein
STRINGPavir.Gb02409.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain