PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.G00727.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | DBB | ||||||||
Protein Properties | Length: 249aa MW: 26313.7 Da PI: 4.8671 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.4 | 1.3e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e ++ C ++ lC+ C +e+H H++ p Pahal.G00727.1 4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46 6******99*********************6678888898877 PP | |||||||
2 | zf-B_box | 28.6 | 2.9e-09 | 54 | 85 | 3 | 34 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeH 34 ++C+ ++ek++ +fC +++ l+C+dC + +H Pahal.G00727.1 54 VPRCDVCQEKPAFIFCVEDRALFCRDCDEPIH 85 689**************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.997 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.13E-6 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.5E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.589 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.1E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-7 | 54 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.17E-7 | 55 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090351 | Biological Process | seedling development | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003712 | Molecular Function | transcription cofactor activity | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MRIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLGGT PGDVPRCDVC 60 QEKPAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFSSVC GAGAGADVPP 120 PPRGCSKPAA AAKAPASKPA QPQEVPSSPF LPPSGWAVED LLQLSNYESS DKKDSPLEFK 180 ELEWFADIDL FHGHAPAKAT TAEVPELLAS PQPASSAGFY KTSGARQSKK PRVELPDDED 240 FFIVPDLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ245906 | 1e-137 | DQ245906.1 Zea mays clone 22173 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825692.1 | 0.0 | B-box zinc finger protein 24-like isoform X1 | ||||
Swissprot | Q96288 | 2e-71 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
TrEMBL | A0A2S3I7Y7 | 1e-179 | A0A2S3I7Y7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb01406.1.p | 1e-154 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3202 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.1 | 5e-69 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.G00727.1 |
Publications ? help Back to Top | |||
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