PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.G00572.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 492aa    MW: 51617 Da    PI: 6.6948
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.G00572.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06339361123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp CgksF++   L  H+++H
  Pahal.G00572.1 339 HKCPTCGKSFPTYQALGGHMSSH 361
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139127.9E-57296IPR007087Zinc finger, C2H2
SMARTSM003550.00667294IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.31E-87394No hitNo description
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576671.31E-8334361No hitNo description
Gene3DG3DSA:3.30.160.605.8E-5336363IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887339366IPR007087Zinc finger, C2H2
PfamPF139126.2E-12339361IPR007087Zinc finger, C2H2
SMARTSM003550.001339361IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280341361IPR007087Zinc finger, C2H2
PfamPF139124.6E-10425448IPR007087Zinc finger, C2H2
PROSITE profilePS501578.538425447IPR007087Zinc finger, C2H2
SMARTSM003550.37425447IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280427447IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MNSRAYQFQL QAAEAAAVAT PVRAADDDEP EQPSAKILLL ELQQAQGTAD APPAPRQGSG  60
VAPMAVGNAQ ATKCPECPKW FVSEKAMFGH LRKHPERGYK GATPPGTAVA GDKKPKKQVA  120
RKEADVSAMN MTAAAATAGE KNPWGAAELS TKWPVTAKRG RAPFAPSGER ALEAGMQASS  180
CCEDEEAAMI LLEIASSSRS TTSETQQGSV HQVHAPDAVS GHQMLDVEQP MLLDHVSGNQ  240
APPEPEQTVQ PEVVLEISAE SQTPAVKELR NLEITTEAVL IVVPANKSIA SSPGTKKAKK  300
RRTAVQDLEQ TAASPAPPEG ADGKPAARRI PSPASDKKHK CPTCGKSFPT YQALGGHMSS  360
HVKGKTGAQH DELAEAQAMH NILAHRNQSA VNVVAASASI GAAAAWVQDL HLQDIQPPAP  420
TVAPHVCAEC HMTFPSGQAL GGHKRKHWFP EKHQAKAAAL AEPAAPAPAQ AARAFDLNEM  480
PEEGEGESDQ P*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008671251.11e-132uncharacterized protein LOC103648579
TrEMBLA0A2S3I7H30.0A0A2S3I7H3_9POAL; Uncharacterized protein
STRINGPavir.Gb01481.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.15e-14C2H2 family protein