PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.G00520.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 331aa MW: 36357.6 Da PI: 10.091

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.G00520.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.4	0.00011	103	120	3	20
ETTTTEEESSHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHi 20 C Cg++F+ ++ L rH Pahal.G00520.1 103 CRVCGRRFRARDALLRHF 120 *****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.094	101	129	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	103	124	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MRIYTGHSTT NTKGHTRGDS RQVTQGPSTA HHHRYRSPHR QGRGGVEQPP EVGGAATDEV 60 VRRPGWWSRA PWFDGPSSLP APPARRLWPV TIRAAAEVRT HLCRVCGRRF RARDALLRHF 120 DAIHAREHAK RLARIDSSRG DRRVRLAAAL SLKLSKYEKA ARELTAGADA AATPADELGR 180 AGIRVALTRT PAASFRERAQ QVLDEGSVGC LMLVSGKDEL ASLLRVARER GVRSVVVGGE 240 SGLARWADVG FSWAEVISGK ARNAAPSVSG KWRDRDVLKG LEWRYEEADD EEELVFEDSD 300 GDGVEELARN AKGKPWWKLE SDDEDSNVGG *

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823075.1	1e-159	uncharacterized protein LOC112898963
TrEMBL	A0A2T8ICM7	1e-158	A0A2T8ICM7_9POAL; Uncharacterized protein
STRING	Pavir.Ib03861.1.p	1e-137	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12234	20	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	5e-22	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Pahal.G00520.1