PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02795.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 334aa    MW: 35144.4 Da    PI: 7.0883
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02795.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.74.9e-28136196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK++ g+++pr+YYrCt++   +Cp++k+v+r+++dpk+++++Y+g+H+++
  Pahal.F02795.1 136 DDGHSWRKYGQKDILGAKHPRAYYRCTHRnsqNCPATKQVQRTDDDPKLFDVVYHGDHTCR 196
                     8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.5E-29124196IPR003657WRKY domain
PROSITE profilePS5081122.171130193IPR003657WRKY domain
SuperFamilySSF1182901.31E-25133196IPR003657WRKY domain
SMARTSM007745.8E-40135197IPR003657WRKY domain
PfamPF031064.8E-27136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAEGGESGGR ARLVSELVCV QDLVRRLELQ LRAPADAASV DLCRQLIHQI VALTDRSIGM  60
ARCSPDLAAA HCLLPAAAQQ QQQPLSGAPS PLSDAGSDHH QPFLRASPKK RKATARWTSQ  120
QVRVSAAGAG AEGPADDGHS WRKYGQKDIL GAKHPRAYYR CTHRNSQNCP ATKQVQRTDD  180
DPKLFDVVYH GDHTCRPSAA STRRAPHNPH AQAALQGLAA RLTVTTDAAI AAAALPPMTP  240
DSCPARGASS PWSLASPVGS DSNGCAQGVS PCPVPGYADW GSHGDLQEVV SACAAVSDLQ  300
GLPVLDSELM SLECFAFDQS FDMGGAMPSL FYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-22136196969OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103111LRASPKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586270.0KU058627.1 UNVERIFIED: Panicum miliaceum WRKY14-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820899.10.0probable WRKY transcription factor 41
TrEMBLA0A2S3I2580.0A0A2S3I258_9POAL; Uncharacterized protein
STRINGPavir.Fa01520.1.p0.0(Panicum virgatum)
STRINGPavir.J37854.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-28WRKY family protein