PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02562.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 175aa    MW: 19349.7 Da    PI: 9.2365
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02562.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.76.7e-153696363
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    elkr rr+++NRe+A+rsRqRK++ ++ L   v++L +  ++L+  l+  ++++a+ ++++
  Pahal.F02562.1 36 ELKRKRRMESNRESAKRSRQRKQQHLDDLNSQVDQLRTTKQQLITALNITTQNYAAAEAQN 96
                    79******************************************99999999998877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.8E-133498IPR004827Basic-leucine zipper domain
PfamPF001706.1E-123690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.2543699IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.62E-113889No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-1138112No hitNo description
CDDcd147025.32E-173990No hitNo description
PROSITE patternPS0003604156IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MSLSGGTFSN GTSSGSSRGT PSFGSEADME LQARMELKRK RRMESNRESA KRSRQRKQQH  60
LDDLNSQVDQ LRTTKQQLIT ALNITTQNYA AAEAQNSVLR TQMMELESRL SALREIICFM  120
NANQVPAAAT ISANNPSAIM SATANYNDPF GASTWNSGMQ MVQQPIDHFL YQCF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055KRSRQR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822603.11e-127bZIP transcription factor 44-like isoform X1
TrEMBLA0A2S3I2091e-126A0A2S3I209_9POAL; Uncharacterized protein
STRINGPavir.Fb01406.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-26basic leucine-zipper 44