PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.F02376.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 287aa MW: 31076 Da PI: 4.9965

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.F02376.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	113.6	1.3e-35	11	107	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C++dC+la+yfp+++p+ f+n+h+lFG+sn+lk+l+++ +e+r++am++++ye++a+ P +G+v +i++lq++++q++ el Pahal.F02376.1 11 ACAACKYQRRRCTPDCPLAEYFPHDRPRVFRNAHRLFGVSNILKTLDRAGPEKRREAMHCIIYESQAWDMYPASGCVPIIHDLQKRIRQAEFELR 105 7*****************************************************************************************99987 PP DUF260 96 ll 97 ++ Pahal.F02376.1 106 RV 107 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.064	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.6E-35	11	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAAASGGAGA ACAACKYQRR RCTPDCPLAE YFPHDRPRVF RNAHRLFGVS NILKTLDRAG 60 PEKRREAMHC IIYESQAWDM YPASGCVPII HDLQKRIRQA EFELRRVYAG IQAYRAAAAA 120 AQGGGPVPGS DGDPSALASA PPPFQFQPAT GDDDGGLLPF TMYGGDQQQM MMNAAASDDE 180 NIALQMPPWM MQPPQYDMTS APAVADMAGK VVPQQDHRFL VGATMVPQSE HQQQHIPIQP 240 AELDDEMSFF ADDGVDGDTE MPHESSMGSS EKKAMRAPKM EGANGF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-23	2	127	2	124	LOB family transfactor Ramosa2.1
5ly0_B	6e-23	2	127	2	124	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025813245.1	0.0	protein LATERAL ORGAN BOUNDARIES-like
TrEMBL	A0A2S3HLA1	0.0	A0A2S3HLA1_9POAL; Uncharacterized protein
STRING	Pavir.J35697.1.p	1e-153	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15459	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-24	LOB domain-containing protein 27

Link Out ? help Back to Top
Phytozome	Pahal.F02376.1