PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.F02143.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 308aa    MW: 31470.3 Da    PI: 10.5129
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.F02143.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31240298259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YYrC+sa gCp++k+ver+a+dp ++++tYeg+H+h+
  Pahal.F02143.1 240 ADEYSWRKYGQKPIKGSPYPRGYYRCSSAkGCPARKHVERAADDPATLVVTYEGDHHHD 298
                     69*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.143234300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-32234300IPR003657WRKY domain
SuperFamilySSF1182901.23E-26236300IPR003657WRKY domain
SMARTSM007741.0E-36239299IPR003657WRKY domain
PfamPF031061.4E-26241297IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAVDLMSCGS GGGGAYEHLA FQEAAAAGLR SLELLASSLS PRAAGRAESP PLGQIADQAV  60
SRFRRVINLL DRTGHARFRR APAAPPATET PPESPRPAPV SQPAAAAPQT KSLTLDFTKP  120
TLEAKASAPA ASATSTSFLS SVTAGGEGSV SKGCSLAAVS SGKPPLPKRK HPASGAAAAA  180
AAAPTAHHHH GEPGAARCHC SRKPKRSRHG LSRRTVRVPA AAGAPGPQSS HAPASSDIPA  240
DEYSWRKYGQ KPIKGSPYPR GYYRCSSAKG CPARKHVERA ADDPATLVVT YEGDHHHDAP  300
AGAARAP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-24223301178Probable WRKY transcription factor 4
2lex_A5e-24223301178Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822145.10.0WRKY transcription factor WRKY51-like
TrEMBLA0A2S3I1760.0A0A2S3I176_9POAL; Uncharacterized protein
STRINGSi014163m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.13e-38WRKY DNA-binding protein 11